Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0842
         (829 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident...    53   2e-07

>At4g34490.1 68417.m04903 cyclase-associated protein (cap1)
           identical to cyclase-associated protein (cap1)
           GI:3169136 from [Arabidopsis thaliana]
          Length = 476

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 33/107 (30%), Positives = 48/107 (44%)
 Frame = +3

Query: 300 IPSDNMSVNGYQDLVQGPLRAYLQLSQQIGGDVATQANLVNAAFQAQSRYIQLAATKAKP 479
           I S + S+  Y+DL+   +   L  +++IGG V     +V  AF +Q   +       KP
Sbjct: 43  IASSDPSILAYEDLISQCVGRALTAAEKIGGPVLDVTKIVAEAFASQKELLVRIKQTQKP 102

Query: 480 SQAEEMQLLTPTSEQISAIQQYREKNRASQFFNHLSAISESIPALGW 620
             A     L P ++         E  R S FFNHL A  +S+ AL W
Sbjct: 103 DLAGLAGFLKPLNDVTMKANAMTEGKR-SDFFNHLKAACDSLSALAW 148



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
 Frame = +2

Query: 650 YVKEMNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQL-LSDLQAYVKQFHTTGLVW--SG 820
           +V+E     +FY N+VL +++ KD  HVEW +A  +L L  L+ YVK  +  G VW  SG
Sbjct: 164 HVEESWQMAEFYNNKVLVEYRNKDADHVEWAKALKELYLPGLREYVKSHYPLGPVWNASG 223

Query: 821 K 823
           K
Sbjct: 224 K 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,170,270
Number of Sequences: 28952
Number of extensions: 335232
Number of successful extensions: 1006
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)