Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0841
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    26   5.6  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   5.6  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    26   7.4  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   9.8  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   9.8  
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    25   9.8  

>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 711 LFIYCLYGWTSSRPTWC*VVTGAHRYLQRKCATH 812
           L + CL+GW  S P +   +    +YL +    H
Sbjct: 5   LKVLCLHGWIQSGPVFSKKMGSVQKYLSKYAELH 38


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 733 GGRAHGPPGVKWLLEPIDIYN 795
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 523 FFQITTQILQSSPERNFTANDVIRGQNNR 437
           F+QI +Q +Q+    +FT  D+++   NR
Sbjct: 84  FYQILSQFMQNICFHDFTIQDLLKPDRNR 112


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 288 MSERSFLSNTLYKCF*IVSTLVSGCLFMNQYQY 190
           M  +SF+++ L+ CF        GC   N Y Y
Sbjct: 1   MIAKSFIASFLFLCFAFSGVKADGCSEENGYYY 33


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 802 HLRCKYLWAPVTT*HQ 755
           +LRCKYL++ +TT H+
Sbjct: 600 NLRCKYLFSKLTTLHE 615


>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 602 LETILPTNTVHNFEPFLIFPAYTGDLLFSN 513
           LE ++P   + +  PFL+ P  + D +FSN
Sbjct: 7   LERLIPALYLAHGSPFLMLPQSSDDEVFSN 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,295,874
Number of Sequences: 5004
Number of extensions: 65192
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)