Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0841
         (818 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)                   29   3.4  
SB_59318| Best HMM Match : WSC (HMM E-Value=0.00068)                   28   7.9  

>SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)
          Length = 354

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -3

Query: 816 QGGWRICVVNIYGLQ*PLNTRWAVSSSTHISNK*KAIKKRPMSSSGLPQADDDFIFL 646
           +GGW   V+   G Q PL  R A     H   +    + +P++ + LP  DDDF+ L
Sbjct: 47  RGGWISYVITTAGPQ-PLEARSAAIDYEHYLTR----QLQPVADAILPFVDDDFVTL 98


>SB_59318| Best HMM Match : WSC (HMM E-Value=0.00068)
          Length = 553

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 507 RKFYKARLNATSQRMTSFVAKIIEELNTLLHIQGSTTHDVIC 382
           ++FY   L  TS  +TS  A     L + L I  S+T DV C
Sbjct: 488 KEFYATTLELTSDVLTSLAAPETGTLLSQLRISLSSTADVTC 529


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,152,257
Number of Sequences: 59808
Number of extensions: 469085
Number of successful extensions: 1177
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)