Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0841
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear recep...    31   0.99 
AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical ...    31   0.99 
U28737-6|AAL02486.1|  566|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AF016665-4|AAC71180.1|  347|Caenorhabditis elegans Nuclear hormo...    29   5.3  
AF016654-7|AAB66029.2|  324|Caenorhabditis elegans Nuclear hormo...    29   5.3  

>AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear receptor
           NHR-113 protein.
          Length = 360

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 404 DPC-MCNNVFSSSIILATNDVIRCEVAFRRAL*NLRGDLKKEDLLCTLEK*EMVRSCEQY 580
           DPC +CN+  +S     T+  I C   FRR + N        D + + EK    R+C   
Sbjct: 25  DPCRICNDSLTSGFHFGTSCCIACAAFFRRTVKNQFTCNANNDCVISFEKKFTCRACRYN 84

Query: 581 LSVRSFLR 604
             +++ +R
Sbjct: 85  NCLKAGMR 92


>AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical
           protein ZK1025.9 protein.
          Length = 341

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 404 DPC-MCNNVFSSSIILATNDVIRCEVAFRRAL*NLRGDLKKEDLLCTLEK*EMVRSCEQY 580
           DPC +CN+  +S     T+  I C   FRR + N        D + + EK    R+C   
Sbjct: 6   DPCRICNDSLTSGFHFGTSCCIACAAFFRRTVKNQFTCNANNDCVISFEKKFTCRACRYN 65

Query: 581 LSVRSFLR 604
             +++ +R
Sbjct: 66  NCLKAGMR 73


>U28737-6|AAL02486.1|  566|Caenorhabditis elegans Hypothetical
           protein F14B8.7 protein.
          Length = 566

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +3

Query: 696 VFFLLLFIYCLYGWTSS 746
           V++LL+F+ CL GW+S+
Sbjct: 158 VYYLLIFVICLLGWSSN 174


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 696  PMSSSGLPQADDDFIFLTN*NTQCNNSTECNL 601
            P +++G PQA+D  +     NT+C +S EC L
Sbjct: 1395 PTTTTGAPQANDSSVE----NTKCTSSDECGL 1422


>AF016665-4|AAC71180.1|  347|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 75 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 407 PCM-CNNVFSSSIILATNDVIRCEVAFRRAL*NLRGDLKKEDLLCTLEK*EMVRSC 571
           PC+ CN+V ++S+    N    C   FRR   N     +  +   + E+  + R+C
Sbjct: 42  PCLVCNDVKNTSMHFGVNSCAACAAFFRRTTENQYACSRNNNCATSYERKILCRAC 97


>AF016654-7|AAB66029.2|  324|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 72 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 407 PCM-CNNVFSSSIILATNDVIRCEVAFRRAL*NLRGDLKKEDLLCTLEK*EMVRSC 571
           PC+ CN+V ++S+    N    C   FRR   N     +  +   + E+  + R+C
Sbjct: 7   PCLVCNDVKNTSMHFGVNSCAACAAFFRRTTENQYACSRNNNCATSYERKILCRAC 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,229,837
Number of Sequences: 27780
Number of extensions: 365740
Number of successful extensions: 884
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)