Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0841
(818 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55830.1 68416.m06203 glycosyltransferase family protein 47 s... 30 1.6
At4g12240.1 68417.m01941 zinc finger (C2H2 type) family protein ... 29 4.9
At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1) domain... 28 6.5
At3g26510.3 68416.m03306 octicosapeptide/Phox/Bem1p (PB1) domain... 28 6.5
At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1) domain... 28 6.5
At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1) domain... 28 6.5
At5g52950.1 68418.m06570 expressed protein ; expression supporte... 28 8.6
At1g30120.1 68414.m03681 pyruvate dehydrogenase E1 component bet... 28 8.6
At1g21370.2 68414.m02674 expressed protein 28 8.6
At1g21370.1 68414.m02673 expressed protein 28 8.6
>At3g55830.1 68416.m06203 glycosyltransferase family protein 47
similar to exostose-related protein 2, Homo sapiens,
PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus
[GI:10443633]
Length = 334
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -1
Query: 590 LPTNTVHNFEPFLIFPAYTGDLLFSNHHANFTKLA*TQLHSE*RHSWPK*SKS*THYYTY 411
L T+ V + + +IFP +T D F+ + T + R WP+ S +YYTY
Sbjct: 157 LKTDAVFSIDDDIIFPCHTVDFAFNV----WESAPDTMVGFVPRVHWPEKSNDKANYYTY 212
Query: 410 KG 405
G
Sbjct: 213 SG 214
>At4g12240.1 68417.m01941 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 364
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 125 NVLQRKRSADLREKIKHQLLIEYWYWFINKQPDTNVETI*KHLYRVLLKKERSLIIFV 298
NVL K L +++K +W ++ +PD + + +HL V+ K+E ++ V
Sbjct: 179 NVLTPKEGYGLADELKRA---GFWVKMVSDKPDAADKALKEHLVEVMDKREVECVVLV 233
>At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 240 SKNTYTGCCLKRNARSLFLYNNNNN 314
+KN GC + RN+R+++L +N N+
Sbjct: 170 TKNPCYGCYVHRNSRNIYLVHNGNH 194
>At3g26510.3 68416.m03306 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 218
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 240 SKNTYTGCCLKRNARSLFLYNNNNN 314
+KN GC + RN+R+++L +N N+
Sbjct: 192 TKNPCYGCYVHRNSRNIYLVHNGNH 216
>At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 240 SKNTYTGCCLKRNARSLFLYNNNNN 314
+KN GC + RN+R+++L +N N+
Sbjct: 170 TKNPCYGCYVHRNSRNIYLVHNGNH 194
>At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 240 SKNTYTGCCLKRNARSLFLYNNNNN 314
+KN GC + RN+R+++L +N N+
Sbjct: 170 TKNPCYGCYVHRNSRNIYLVHNGNH 194
>At5g52950.1 68418.m06570 expressed protein ; expression supported
by MPSS
Length = 945
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 110 QTIDHRQVVQRINCSSYKR 54
QT+DH ++++CS YKR
Sbjct: 465 QTVDHEDSRKKVSCSEYKR 483
>At1g30120.1 68414.m03681 pyruvate dehydrogenase E1 component beta
subunit, chloroplast identical to pyruvate dehydrogenase
E1 beta subunit [Arabidopsis thaliana] GI:2454184;
identical to cDNA pyruvate dehydrogenase E1 beta subunit
mRNA, nuclear gene encoding plastid protein GI:2454183
Length = 406
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 500 NLRGDLKKEDLLCTLEK*EMVRSCEQYLSVRSFLRL 607
NL+ + ED +C LE+ EMVR E ++++ ++ R+
Sbjct: 260 NLKEKIPDEDYVCNLEEAEMVRPGE-HITILTYSRM 294
>At1g21370.2 68414.m02674 expressed protein
Length = 342
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 289 NERAFLFKQHPV*VFLDCFHIGVRLLI 209
N +FK HPV VF+ C G+ +LI
Sbjct: 48 NRLHHMFKLHPVLVFVVCVSFGITVLI 74
>At1g21370.1 68414.m02673 expressed protein
Length = 342
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 289 NERAFLFKQHPV*VFLDCFHIGVRLLI 209
N +FK HPV VF+ C G+ +LI
Sbjct: 48 NRLHHMFKLHPVLVFVVCVSFGITVLI 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,852,270
Number of Sequences: 28952
Number of extensions: 324921
Number of successful extensions: 752
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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