Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0840
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    32   0.088
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   4.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   7.6  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   7.6  

>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 31.9 bits (69), Expect = 0.088
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +2

Query: 167 HFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHF 346
           H + +V D   + KFY E+ GMK++    F E  E + +    +       G        
Sbjct: 14  HTMIRVKDLDKSLKFYTEVFGMKLIDQWVFEEN-EFSLSFLAFDGPGALNHGVERSKREG 72

Query: 347 VVELTYNYGVTHYE 388
           ++ELTYN+G    E
Sbjct: 73  ILELTYNFGTEKKE 86


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 578  SSNLAKSIAYWNGLL-TLKLYEKTDKTALLGYS 673
            S  + KSI YW  LL   K Y+K D  +LL Y+
Sbjct: 1414 SDKIIKSITYWQSLLFNSKTYQK-DLFSLLWYA 1445


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +3

Query: 105 SELKS*AQSC*IAKWLAVVLFISYLKSQI 191
           SE+K  +    I+ W++++LF+S+L  ++
Sbjct: 505 SEIKQYSSLILISLWISLILFVSFLNRRL 533


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 159 RPLTILLFNNFELMTLVQN*VI 94
           + L +L+FNN +L TL+QN ++
Sbjct: 131 KQLFLLIFNNGKLRTLLQNAIV 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,904
Number of Sequences: 5004
Number of extensions: 49972
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)