Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0838
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 66 7e-12
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 54 3e-08
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 29 0.55
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 1.7
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 2.9
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 27 2.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 5.1
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 6.7
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 25 8.9
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 8.9
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 8.9
>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 221
Score = 65.7 bits (153), Expect = 7e-12
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Frame = +3
Query: 339 LDVAAAARIVSVGSTVYAPTLYFWYKFLDKKF-AGNAIKAVATKVASDQFIMTPILLATF 515
LDV R + G + P + W+ L N A+ +VA DQFI P+ + F
Sbjct: 87 LDVHRTIRYAAYGLCL-TPIQFRWFVALSNVIQTENPFIAIVLRVALDQFIFAPLGIVFF 145
Query: 516 YTLLGILERR--EDVFEELKQKYWKTFIANQAFWIPAQTINFYFMPSHLRVVYVASTSFV 689
+ +GI E + E + ++ YW T AN W Q NF F+P L+V++ + S V
Sbjct: 146 FLFMGITECKSYERLKSYFRKHYWPTLKANYILWPAVQLFNFTFVPLVLQVIFANAVSMV 205
Query: 690 W 692
W
Sbjct: 206 W 206
>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 206
Score = 53.6 bits (123), Expect = 3e-08
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Frame = +3
Query: 324 PEKPDLDVAAAARIVSVGSTVYAPTLYFWYKFLDKKFA--GNAIKAVATKVASDQFIMTP 497
PE P + + V+ G + +P + W + L KF AI V +V DQ + P
Sbjct: 61 PEIPS--IKRVLQFVTFGFAI-SPFQFRWLRLLSAKFPIEKGAINVVK-RVLLDQAVFAP 116
Query: 498 ILLATFYTLLGILERR--EDVFEELKQKYWKTFIANQAFWIPAQTINFYFMPSHLRVVYV 671
A F++ + + E + +++L+ +W T AN W QT+NF+ MP ++ +
Sbjct: 117 FGTAFFFSWMTLAEGKGFRGAYDKLQAVFWPTLKANYMVWPFFQTVNFWLMPLQYQMPFA 176
Query: 672 ASTSFVWINILCFIK 716
+ + W NI +K
Sbjct: 177 CTVAIFW-NIFLSLK 190
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 29.5 bits (63), Expect = 0.55
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = -2
Query: 387 KQYYQ---LRRFGRQPRHLNLAFPASKFY*RFAATIQRQYKTLRRLRCWLEPDDV--VVI 223
KQY+ LR+ GR PR + +PA K Y R +L + D+V ++
Sbjct: 1374 KQYFHMRDLRKSGRVPRFGSFKYPALKLYDRGVLVSISHMPQKEKLYITISADEVGKFIL 1433
Query: 222 GATKPVV 202
AT P V
Sbjct: 1434 EATSPTV 1440
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 286 LNCRSKPSIEFTRRKSQI*MSRLPPESSQLVVLFTHPHCTF 408
L+C +KP + FT KS + + P + V+ F H T+
Sbjct: 51 LSCEAKPKLLFTPTKSSLSIGNFPYKEFDPVLKFPGIHYTY 91
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 505 NNIGVIMN*SEATFVATALIALPANFLSKNLYQKY 401
+N+ +M S T VA ++I P N + N+Y+K+
Sbjct: 385 SNLYHLMGYSAFTGVAASVILFPCNIIVANVYKKF 419
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 324 PEKPDLDVAAAARIVSVGSTVYAPTLYFW 410
PE+PDL + + + + +G VYA Y W
Sbjct: 41 PEQPDLILLSHSDLAHIGGLVYAYYKYDW 69
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 37 LFKKKNKKHPIHFAIFFVYHTKK 105
LF+K+ +HP A+ FVY+ K
Sbjct: 1755 LFEKEANEHPSSIALHFVYNVDK 1777
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 346 SRLPPESSQLVVLFTHPHCTFGTNFWTRSL 435
S P +SQL++ T+ HC T+F + L
Sbjct: 260 STQPRLASQLIIAVTNTHCDIVTSFLLKKL 289
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +3
Query: 330 KPDLDVAAAARIVSVGSTVYAPTLYFWYKFLDKKFAGNAIKAVATKVASDQF 485
K D+ A + + GS YAP + +FL G + V + S F
Sbjct: 163 KSDMKYAVSPFPLETGSNPYAPVIESLTRFLSTLTPGTVCRLVLPSILSPAF 214
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 477 DQFIMTPILLATFYTLLGILERR 545
+Q+I + +L T + LGILERR
Sbjct: 872 NQYIKSYLLFVTHFPSLGILERR 894
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 212 LVAPITTTSSGSNQHRSLRN 271
+ P+ S G N+HR LRN
Sbjct: 292 IAMPLRARSDGHNEHRELRN 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,433
Number of Sequences: 5004
Number of extensions: 65867
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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