Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0838
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133...    93   2e-19
11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143...    79   4e-15
01_01_0899 - 7085140-7085539,7086777-7086868,7088098-7088187           59   3e-09
02_02_0131 - 7065762-7065813,7065907-7065992,7066080-7066150,706...    42   5e-04
01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584...    31   1.0  
08_02_1631 + 28381248-28381418,28382069-28382144,28382925-283829...    30   2.3  
11_01_0683 - 5595121-5596186,5597214-5597219,5597923-5598836           29   4.0  
09_02_0585 - 10939328-10939724,10940242-10940431,10940722-109407...    28   9.3  
05_02_0023 + 5698332-5698850                                           28   9.3  
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616...    28   9.3  
01_07_0342 - 42860548-42862343,42863345-42863396,42863666-428638...    28   9.3  

>12_01_0180 -
           1335825-1335980,1336584-1336670,1336767-1336859,
           1336985-1337057,1337153-1337247,1337917-1338004,
           1338135-1338424
          Length = 293

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 1/170 (0%)
 Frame = +3

Query: 204 LLAWSRQSLQRRPVLTNTVVYATFYTAAELSQQTFNRIYSPEKPDLDVAAAARIVSVGST 383
           LLAW   +L + P+ T  V  A      +L  Q    +   + P LD+        +G  
Sbjct: 94  LLAWYLLALDKHPITTKAVTSAVLTLTGDLICQ----LAIDKVPKLDLKRTFVFTFLGLV 149

Query: 384 VYAPTLYFWYKFLDKKFAGNAIKAVATKVASDQFIMTPILLATFYTLLGILERRED-VFE 560
           +  PTL+ WY +L K    N       ++  DQFI +PI +  F +LL  LE +   V  
Sbjct: 150 LVGPTLHVWYLYLSKLVMINGASGAIARLLLDQFIFSPIFIGVFMSLLVTLEGKPSLVVP 209

Query: 561 ELKQKYWKTFIANQAFWIPAQTINFYFMPSHLRVVYVASTSFVWINILCF 710
           +LKQ++  + IAN   WIP Q +NFYF+P   ++ +  +T   ++ +L F
Sbjct: 210 KLKQEWLSSVIANWQLWIPFQFLNFYFVPQKFQLDFPKATQTTFLYLLQF 259


>11_01_0180 -
           1431758-1431838,1431975-1432061,1432180-1432230,
           1432275-1432367,1432496-1432568,1432657-1432751,
           1433428-1433515,1433647-1433936
          Length = 285

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 18/187 (9%)
 Frame = +3

Query: 204 LLAWSRQSLQRRPVLTNTVVYATFYTAAELSQQTFNRIYSPEKPDLDVAAAARIVSVGST 383
           LLAW   +L + P+ T  V  A      +L  Q    +   + P LD+        +G  
Sbjct: 94  LLAWYLLALDKHPITTKAVTSAVLTLTGDLICQ----LAIDKVPKLDLKRTFVFTFLGLV 149

Query: 384 VYAPTLYFWYKFLDKKFAGNAIKAVATKVASDQFIMTPILLATFYTLLGILERRED-VFE 560
           +  PTL+ WY +L K    N       ++  DQFI +PI +  F +LL  LE +   V  
Sbjct: 150 LVGPTLHVWYLYLSKLVTINGASGAIARLLLDQFIFSPIFIGVFMSLLVTLEGKPSLVVP 209

Query: 561 ELKQ----------------KYW-KTFIANQAFWIPAQTINFYFMPSHLRVVYVASTSFV 689
           +LKQ                + W  + IAN   WIP Q +NFYF+P   +V+     +  
Sbjct: 210 KLKQILCSTADAVAVADMWVREWLSSVIANWQLWIPFQFLNFYFVPQKFQVLAANFVALA 269

Query: 690 WINILCF 710
           W  IL F
Sbjct: 270 WNVILSF 276


>01_01_0899 - 7085140-7085539,7086777-7086868,7088098-7088187
          Length = 193

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
 Frame = +3

Query: 369 SVGSTVYAPTLYFWYKFLDK----KFAGNAIKAVATKVASDQFIMTPILLATFYTLLGIL 536
           S G     P  ++WY++LD+    ++     K VA+KVA+D  +  P+ L  F++ +G+ 
Sbjct: 48  SFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGPVDLLLFFSYVGLA 107

Query: 537 ERR--EDVFEELKQKYWKTFIANQAFWIPAQTINFYFMPSHLRVVYV 671
             R  E V +++K+ +    +     W   Q  NF F+P   +++YV
Sbjct: 108 SGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLYV 154


>02_02_0131 -
           7065762-7065813,7065907-7065992,7066080-7066150,
           7066563-7066638,7066977-7067078,7068025-7068123,
           7068208-7068339
          Length = 205

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
 Frame = +3

Query: 393 PTLYFWYKFLDKKFAGNA-IKAVATKVASDQFIMTPILLATFYTLLG-ILERR--EDVFE 560
           P  +F +K LD  F G    K +A KV  +Q   +P     F    G ++ERR  ++V  
Sbjct: 86  PFGHFLHKVLDYIFKGKKDTKTIAKKVLLEQITSSPWNNLLFLFYYGYVVERRPFKEVKT 145

Query: 561 ELKQKYWKTFIANQAFWIPAQTINFYFMPSHLRVVYVASTSFVW 692
            +K++Y    ++   FW     IN  +MP   RV++ +  +  W
Sbjct: 146 RVKKQYPSVQLSAWMFWPIVGWINHMYMPLQFRVIFHSFVACCW 189


>01_05_0176 -
           18957676-18958067,18958139-18958242,18958358-18958483,
           18959495-18959628,18959757-18959894,18960835-18960964,
           18961316-18961357,18964741-18965024
          Length = 449

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 189 IMASKLLAWSRQSLQRRPVLTNTVVYATFYTAAELSQQT---FNRIYSPEKPDLDVAAAA 359
           +  + LLAW    L      +N ++YA  YT  +           +     P L  AAA+
Sbjct: 189 VAGTALLAWKANGLAAGLAASNLILYAFVYTPLKQIHPVNTWVGAVVGAIPPLLGWAAAS 248

Query: 360 RIVSVGSTVYAPTLYFW 410
             +S+ + +    LY+W
Sbjct: 249 SELSLNAMILPAALYYW 265


>08_02_1631 +
           28381248-28381418,28382069-28382144,28382925-28382995,
           28383375-28383460,28384359-28384423,28384727-28385067
          Length = 269

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 552 VFEELKQKYWKTFIANQAFWIPAQTINFYFMPSHLRVVYVASTSFVW 692
           V  +LK+ Y    +    FW     IN+ +MP  LRV++ +  +  W
Sbjct: 89  VKSKLKKDYASVQLTAWKFWPIVSWINYEYMPLQLRVLFHSFVASCW 135


>11_01_0683 - 5595121-5596186,5597214-5597219,5597923-5598836
          Length = 661

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +2

Query: 419 FGQEVCRQRDQSRSDKSGFRSVHYDAYIIGHVLYFVGDFRT*RRCFRRAKAEILEDVYSQ 598
           FG+      D + S + G R V  + Y++ HVL F G +    R    A  E+  DV+  
Sbjct: 67  FGRRPLVYADHTASGR-GLRYV--EDYVLHHVLPFYGQYHLPCRFSSHAICELDHDVHGD 123

Query: 599 SSILDS 616
             ++D+
Sbjct: 124 GEVIDA 129


>09_02_0585 -
           10939328-10939724,10940242-10940431,10940722-10940790,
           10941080-10941206,10941401-10941696,10941791-10941954,
           10942453-10942601
          Length = 463

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 324 PEKPDLDVAAAARIVSVGSTVYAPTLYFWYKFLDKKFAGN 443
           P +P+LD+A A+R    G+ +      F YK L+ KF  N
Sbjct: 122 PREPELDIAPASRNNHGGTLLKVENRQFTYKELE-KFTNN 160


>05_02_0023 + 5698332-5698850
          Length = 172

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 546 EDVFEELKQKYWKTFIANQA 605
           E V ++LK+KY KTF  N A
Sbjct: 31  EQVMQQLKEKYLKTFFCNPA 50


>04_04_0457 +
           25359486-25359571,25360690-25360782,25361561-25361622,
           25361758-25361816,25363624-25363733,25364795-25364829,
           25365469-25365546,25365952-25366005,25366277-25366362,
           25366468-25366571,25366986-25367054,25367135-25367250,
           25367387-25367421,25367512-25367654,25367808-25367930,
           25368463-25368556
          Length = 448

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 495 PILLATFYTLLGILERR-EDVFEELKQKYWKTFIANQAFWIPAQTIN 632
           P+ L+T  T+L   + R +D+F+E+ ++ WK      + W   + I+
Sbjct: 240 PLYLSTKNTILKKYDGRFKDIFQEVYEEKWKEKFEENSIWYEHRLID 286


>01_07_0342 -
           42860548-42862343,42863345-42863396,42863666-42863848,
           42864288-42864461,42864528-42864962
          Length = 879

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
 Frame = +3

Query: 333 PDLDVAAAARIVSVGSTVYA---PTLYFWYKFLDKKFAGNAIKAVATKVASDQFIMTPIL 503
           PDL VAA AR+V  G +  A    ++      L+   AG  + +V  +      ++    
Sbjct: 407 PDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVGTA 466

Query: 504 LATFYTLLGILERREDVFEELKQKYWKTFIA 596
           L   Y     L   + VF E+++K   TF A
Sbjct: 467 LVDMYAKCRRLGAAQQVFGEMEEKNVATFTA 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,542,173
Number of Sequences: 37544
Number of extensions: 393089
Number of successful extensions: 880
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)