Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0838
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37448| Best HMM Match : Mpv17_PMP22 (HMM E-Value=3.6e-05)           40   0.002
SB_25249| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.009
SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_42017| Best HMM Match : DUF1421 (HMM E-Value=0.43)                  28   7.2  

>SB_37448| Best HMM Match : Mpv17_PMP22 (HMM E-Value=3.6e-05)
          Length = 101

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +3

Query: 384 VYAPTLYFWYKFLDKKFAGNAIKAVATKVASDQFIMTPILLATFYTLLGILERR--EDVF 557
           V  P ++++Y +L+         + A K+  D+ I +P     F+ ++ I E +  ++  
Sbjct: 4   VTGPLVHYFYNYLEHFVPRGVPFSKAKKLFIDRLIFSPPFYLLFFYIVAIFEGKSNKEAI 63

Query: 558 EELKQKYWKTFIANQAFWIPAQTINFYFMP 647
             +K  YW     +   W   Q +NF ++P
Sbjct: 64  ARIKANYWGALKMSLKVWPLVQFVNFTYIP 93


>SB_25249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
 Frame = +3

Query: 210 AWSRQSLQRRPVLTNTVVYATFYTAAELSQQTFNRIYSPEKPDLDVAAAARIVSVGSTVY 389
           AW  + L +RP+LT        Y+  ++  Q   R+   + P LD     R    G+ + 
Sbjct: 292 AWYNERLTKRPLLTKAFTAGVLYSVGDVIAQ---RVSLRDAP-LDRPRMLRAAIYGTFIV 347

Query: 390 APTLYFWYKFLD----KKFAGNAIKAVATKVASDQFI-MTPILLATFY 518
           AP  +  + FL+    +K A   +     KV  DQF+   P ++A ++
Sbjct: 348 APLAHLHFNFLNWLVVEKLAVRTLLVPFVKVYFDQFVYWAPSIVAIYH 395


>SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 57  KTSDTFCYILCLSYEKILVIVTQIS--HTIRVN*ATTYLSF 173
           +++D FCYI CLS E +L I + +     +R + A T L F
Sbjct: 13  ESNDGFCYITCLSTEILLFIFSLLDARSIVRASRACTRLHF 53


>SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 389 RTHIVLLVQIFGQEVCRQRDQSRSDKSGFRSVHYDAY 499
           R H+      F +  C +R ++   K+GFRSVH   Y
Sbjct: 64  RPHLQGYFYDFTESYCNERGRTIRSKTGFRSVHGTPY 100


>SB_42017| Best HMM Match : DUF1421 (HMM E-Value=0.43)
          Length = 565

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 478 SEATFVATALIALPANFLSKNLYQKYNVGA*TVLP-TETIRAAAATSKS 335
           S+ATF ATA     ANF +K   Q     A T +P ++   AA AT +S
Sbjct: 189 SQATFAATATPQSQANFAAKATPQSQATFAATAIPQSQANFAAKATPQS 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,959,715
Number of Sequences: 59808
Number of extensions: 467688
Number of successful extensions: 881
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)