Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0837
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    39   7e-04
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   5.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   8.7  

>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = -2

Query: 584 SGGKGGAMDKIKALEKANVIVTRSPAKMGVELHKEMKRLE 465
           +GGKG A  K +ALE A V ++RSPA +G  + +E+ +L+
Sbjct: 291 AGGKGTAAAKFEALEAAGVRISRSPATLGSLIVEELNKLK 330



 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 613 RRMGHAGAIIRAAK 572
           RRMGHAGAI+   K
Sbjct: 281 RRMGHAGAIVAGGK 294


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 386 YCYYLFSIVVTICLVLLF 333
           + +YLF+IV+T C+  +F
Sbjct: 543 FIFYLFTIVITFCMSAVF 560


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 268 YMYVRD*ILYFYENIN 315
           Y Y++D ILYF EN N
Sbjct: 739 YFYLKDNILYFAENRN 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,497
Number of Sequences: 5004
Number of extensions: 45694
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)