Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0837
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36)             32   0.32 
SB_36529| Best HMM Match : K_tetra (HMM E-Value=2e-24)                 31   0.56 
SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  31   0.74 
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)                   28   6.9  
SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_22086| Best HMM Match : Ion_trans_2 (HMM E-Value=0.00052)           27   9.1  

>SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36)
          Length = 454

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
 Frame = +2

Query: 134 NNNYLIE--FLTNESAYLIRCTIEFVHAIAISTRPIKHCYIKLNLVDICMYEIKYYIFMK 307
           N+N L    ++  E A  I  TIE +  +A +   IK C   LN+VDI +  + YYI + 
Sbjct: 182 NSNVLATNVYVIIEMACYIWFTIELIFRLASAPEKIKFCKQPLNVVDI-LTVLPYYIVLA 240

Query: 308 ISICLRNRKITIQDKL*QQSKINNSNIVTKTLYKSGST*RVYTFLRNV 451
           +    R   +++   +     +    I   + Y SG    +YTFL ++
Sbjct: 241 VEKS-RTGSLSV---MRAARMLRVLRIFKLSRYSSGMRVLLYTFLMSL 284


>SB_36529| Best HMM Match : K_tetra (HMM E-Value=2e-24)
          Length = 279

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 134 NNNYLIE--FLTNESAYLIRCTIEFVHAIAISTRPIKHCYIKLNLVDICMYEIKYYIFMK 307
           N+N L    ++  E A  I  TIE +  +A +   IK C   LN+VDI +  + YYI + 
Sbjct: 182 NSNVLATNVYVIIEMACYIWFTIELIFRLASAPEKIKFCKQPLNVVDI-LTVLPYYIVLA 240

Query: 308 I 310
           +
Sbjct: 241 V 241


>SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 445

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -2

Query: 584 SGGKGGAMDKIKALEKANVIVTRSPAKMG 498
           SGGKG A +K  ALE A V   RS A++G
Sbjct: 149 SGGKGTADEKFAALEDAGVKTVRSLAQIG 177


>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
          Length = 1188

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 261 WLIYVCTRLNIIFL*KYQYVSGIAK*QYKTNCNNNRK*IIAI 386
           +++ V +  NIIFL  Y+Y+S +   QY+T     R  ++AI
Sbjct: 172 YMLTVSSVFNIIFLTGYRYISIVKPPQYRTLVTTRRT-LVAI 212


>SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 388 YIAIIYFRLLLQFVLYCYFAIPET 317
           Y  I++  L+L F L+ YF +PET
Sbjct: 6   YTFIVFLVLVLGFWLFTYFLVPET 29


>SB_22086| Best HMM Match : Ion_trans_2 (HMM E-Value=0.00052)
          Length = 458

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -3

Query: 250 YITMLYWSC*NCYSMHEFDSAPYEISGFVC*KFYKIIIVISRVYLLSNV 104
           Y+   YW+   C S+   D   Y++S      F+ +I ++   Y++++V
Sbjct: 291 YLISFYWAAATCASVGYGDIRSYQVSEMTYSFFFIVIGIVFYGYIVASV 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,558,313
Number of Sequences: 59808
Number of extensions: 311819
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)