Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0836
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    28   1.6  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   2.8  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    26   6.5  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   6.5  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   6.5  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   8.6  

>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -3

Query: 584 LPIKPPITLPA*SQYSVAYILIMMNNKHLCLYIHSELLWLYKPVTRRPSKSFIHIIIK 411
           LPI PP+  P+ S+   A  +   NN+ + +YI S    L   ++  P KS I  + K
Sbjct: 277 LPI-PPLPFPSSSKQEHATFVANTNNQPISIYIASGPWSLRDDLSFSPLKSMISYVNK 333


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 545 QYSVAYILIMMNNKHLCLYIHSELLWLYKPVTRRPSKSFIHIIIKRNKTV 396
           +YS   +L+  ++  L +Y ++EL +LY        K+ IH  I  N+ V
Sbjct: 180 EYSSVTMLVPDSSAFLNVYTNTELAYLYSMYAAEDVKTLIHQHILVNQRV 229


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 270 SLTITSTRELLRTTNKAAVASVNTISLNNHSDLYKPVI*ALSYGFIS 410
           +LT+TS  + +R T       V T   NN ++LY P+    S  ++S
Sbjct: 218 TLTLTSLDQNIRCTRCTIPKRVITSMHNNIAELYNPISCIKSLPYLS 264


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 246 LALIERQHSLTITSTRELLRTTNKAAVASVNTIS 347
           L  + R H  ++ +  E +   N+AA A+ NT+S
Sbjct: 618 LQAVARNHRNSLANIDERIMRQNQAATANTNTVS 651


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -3

Query: 701 NATHSMPISIFQKLLLSILDSVIGFSLGAFN*RLFRCVALPIK 573
           ++   M +S+F K + ++++S I     +F  RLF  + L ++
Sbjct: 182 SSERDMFLSLFLKPIYTLMESEINIKNASFRSRLFNIIGLAVQ 224


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 743 SRGIYYII*FNVFGNATHSMPISIFQKLLLSILD 642
           ++G +Y I F VF N       S F+K L +++D
Sbjct: 437 TKGFWYAISFGVFSNCFSLQLQSFFEKHLGNVVD 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,276
Number of Sequences: 5004
Number of extensions: 56125
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)