Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0836
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   4.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.0  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 482 SELLWLYKPVTRRPSKSFIHIIIKRNKTV 396
           +E +W+          SF+H + +RNK V
Sbjct: 113 AEKIWVPDTFFANDKNSFLHDVTERNKLV 141


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
 Frame = -2

Query: 372 YRDPS---GYLMISYLLKRPRPC 313
           YR P    G+ + +  LK PRPC
Sbjct: 173 YRIPKSGKGFSLFARFLKNPRPC 195


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 79  ILGDRIRPNDVTISSDVSNSNYRHFWNLVQ 168
           ILG+ +  N     S    S +RHF  +++
Sbjct: 380 ILGEDVENNSEVSKSRTKESAWRHFAAIIE 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,256
Number of Sequences: 438
Number of extensions: 4323
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)