Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0835
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   2.4  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   7.2  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   9.5  

>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +2

Query: 701 IFYIN*YFEVGLLFITKLF 757
           IFY   Y  VGLL+ITKLF
Sbjct: 141 IFYYGIYNAVGLLWITKLF 159


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 151 NLKKLYNQNLSTF*LPVVSNLKSNLIFCFENFTRGD 258
           +L+KL    ++TF  P +S  +++   CF  F   D
Sbjct: 720 SLEKLPTLEINTFNCPAISYFETSFDECFSKFASSD 755


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 297 PVNLLKIKLSTVIFLR 344
           P N+LK+K+ T IFLR
Sbjct: 449 PENILKLKIDTSIFLR 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,214
Number of Sequences: 5004
Number of extensions: 52993
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)