Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0833
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    28   1.9  
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    26   5.9  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    26   7.8  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   7.8  

>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 262 KYSFSDRTSIYNKYIDIGED 203
           KY FS+R  IYN++++I  D
Sbjct: 126 KYYFSERREIYNRFLEIMRD 145


>SPMIT.08 |||mitochondrial ribosomal small
          subunit|Schizosaccharomyces pombe|chr
          mitochondrial|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 84 KNNLKHLLRTIILDIFF 34
          KNNLK+L+ TI+ + FF
Sbjct: 3  KNNLKNLITTIVTNAFF 19


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 772 EMIWDEIYIISVKWWSFTKIFSVDFLEDPEKL 677
           + I D    + +++W+      VD+LED E+L
Sbjct: 98  QAIHDNDCFVFIQFWNLPGELKVDYLEDQERL 129


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 304  HKLLLVIYSNNIILK*TMSFCATAKF 381
            H  L++I++ ++IL  ++ FC  AK+
Sbjct: 1023 HSFLVIIFACSVILNLSLMFCFGAKY 1048


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,764
Number of Sequences: 5004
Number of extensions: 60368
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)