Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0831
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         28   1.4  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    28   1.4  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    28   1.9  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    26   7.5  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    25   10.0 

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 41  LVGSMLDALPIM-WKAKVPAHECLSFLEGKLREFCVL 148
           LVGS+L +LPI+ + A  P    +  L   LR+ C+L
Sbjct: 159 LVGSLLSSLPIIGYSAYSPVKAAVRNLADSLRQECIL 195


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
 Frame = +2

Query: 374 NVLHQLIPNHFVNITTALCISQEVLL--LSHVLTC--TRCFFLVSHIFGHNTSSYSNDNL 541
           N +   + N+ VNI T +  S EVL+  ++ ++ C  + C+ L+    GHN+S YSN  +
Sbjct: 749 NNIADALKNNKVNIGT-IKASLEVLVKCIAPIIPCFSSECWLLL----GHNSSVYSNWPI 803

Query: 542 IKLKK 556
            K KK
Sbjct: 804 SKNKK 808


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 153 FERTQNSRSFP--SKNDRHSCAGTFAFHMIGSASSMEPTNGDIPPEQQSL 10
           +E   +S SF   S   R +CA  F  +++G  +   P + + PPE   L
Sbjct: 711 YELMNDSASFEDMSLECRDNCANAFQDNLVGFPTISNPFHANAPPEPHEL 760


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 533 HYCSYSYYDQICAKQGKNSAY 471
           HY SYS YD++  ++  N +Y
Sbjct: 218 HYDSYSSYDELERRRSSNESY 238


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 150 ERTQNSRSFPSKNDR-HSCAGTFAFHMIGSASSMEPTNGDI 31
           E    S S PS N R H+  GTF F    S  SME  N  I
Sbjct: 334 ESCLGSFSSPSVNARTHNLVGTFKFVSGDSKGSMENFNAAI 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,978
Number of Sequences: 5004
Number of extensions: 63140
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)