Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0831
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0880 - 12103703-12103726,12103938-12104210,12104389-121049...    29   6.0  

>03_02_0880 -
           12103703-12103726,12103938-12104210,12104389-12104931,
           12105017-12105374,12105696-12105994,12106116-12106189,
           12106630-12106717,12107573-12107674,12107813-12107841,
           12108118-12108235
          Length = 635

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
 Frame = +2

Query: 458 HVLTCTRCFFLVSHIFGHNTSSYSNDNLIKLKKN*DQIL*EMVEISIKTFILGSESQV-- 631
           H+LT  + F+ + H FG N+   S  ++I  +     IL  + E S +   L  E +V  
Sbjct: 364 HILTDAQNFYAMKHWFGRNSYRESAVHVINYE---HIILENLPEFSSQQLYLPEEFRVFI 420

Query: 632 -NIIVINKYLRSKII*ILTSS------VLR*LNYIIILECDIFVEYNDVSFFF 769
            N+   ++  R + + + + S      +L+ L  +I+L+ D+ V+  D+SF +
Sbjct: 421 SNLERPSEKTRMEYLSVFSHSHFFIPEILKDLKKVIVLDDDVVVQ-RDLSFLW 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,589,418
Number of Sequences: 37544
Number of extensions: 357987
Number of successful extensions: 789
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)