Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0831
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65)                 32   0.66 
SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_51057| Best HMM Match : Neur_chan_memb (HMM E-Value=0.0048)         28   8.1  

>SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65)
          Length = 963

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +2

Query: 203 LTKSLNVDMNDVPLLMAVATTHTPQ 277
           L K+L +D +D+ LL+AVA+ H PQ
Sbjct: 855 LAKTLGIDDSDMMLLLAVASAHAPQ 879


>SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 147 RTQNSRSFPSKNDRHSCAGTFAFHM 73
           R   + S P ++DR+SC G+F  H+
Sbjct: 335 RVMQTASSPWRSDRNSCGGSFTVHL 359


>SB_51057| Best HMM Match : Neur_chan_memb (HMM E-Value=0.0048)
          Length = 281

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 287 WLRLVECAWWLRPLTRERHSCQRSETSSELQYRR 186
           W+RLV C W+       RH     +T  + +YR+
Sbjct: 28  WVRLVICKWFATIFRITRHDVPPDDTPKKNKYRK 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,925,985
Number of Sequences: 59808
Number of extensions: 467689
Number of successful extensions: 1187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)