Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0831
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    24   1.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   8.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.0  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 401 HFVNITTALCISQEVLLLSHVLTCTRCFFLVSH 499
           H V + TA+  +  V LL H+LT T    L+++
Sbjct: 112 HIVRLVTAIGDAYGVALLLHMLTTTITLTLLAY 144


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 506 GHNTSSYSNDNLIKLKKN*DQIL*EMVEI---SIKTFILGSESQVNIIVINKYLRS 664
           G+N +++ N N+ +LK++    + ++ E      K  ++  ES+   I+ N+ +RS
Sbjct: 160 GNNITNFKNSNIFQLKQHMRDTMNKIAETLDEDTKNKLI-EESKTVFILNNEIIRS 214


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 379 IASTYTKSFRKHHNSSLYLSRSFTSLTCANLYALFFP 489
           IA+T  +  R HH+ S+  S   T      +   +FP
Sbjct: 110 IATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFP 146


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 379 IASTYTKSFRKHHNSSLYLSRSFTSLTCANLYALFFP 489
           IA+T  +  R HH+ S+  S   T      +   +FP
Sbjct: 110 IATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFP 146


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 575 TKSGLNFFLT*LNCH 531
           T SG +FFL  + CH
Sbjct: 353 TASGSSFFLAVMGCH 367


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 379 IASTYTKSFRKHHNSSLYLSRSFTSLTCANLYALFFP 489
           IA+T  +  R HH+ S+  S   T      +   +FP
Sbjct: 49  IATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFP 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,272
Number of Sequences: 438
Number of extensions: 4771
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)