Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0831
         (832 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53040.2 68414.m06006 expressed protein contains Pfam profile...    29   3.8  
At1g53040.1 68414.m06005 expressed protein contains Pfam profile...    29   3.8  
At5g53895.1 68418.m06704 hypothetical protein                          29   5.0  
At5g37620.1 68418.m04531 DC1 domain-containing protein contains ...    28   8.7  

>At1g53040.2 68414.m06006 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 540

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
 Frame = +2

Query: 374 NVLHQLIPNHFVNITTALC----ISQEVLLLSHVLTCTRCFFLV----SHIFGHNTSSYS 529
           ++LH+L  +H V + +A+     I QE + +S +      F++     +H++  NTSSY+
Sbjct: 229 DILHELDQSHDVIVASAIFGKYDIIQEPVNISEMARKNIPFYMFVDEETHLYLKNTSSYT 288

Query: 530 NDN 538
           +DN
Sbjct: 289 DDN 291


>At1g53040.1 68414.m06005 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 540

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
 Frame = +2

Query: 374 NVLHQLIPNHFVNITTALC----ISQEVLLLSHVLTCTRCFFLV----SHIFGHNTSSYS 529
           ++LH+L  +H V + +A+     I QE + +S +      F++     +H++  NTSSY+
Sbjct: 229 DILHELDQSHDVIVASAIFGKYDIIQEPVNISEMARKNIPFYMFVDEETHLYLKNTSSYT 288

Query: 530 NDN 538
           +DN
Sbjct: 289 DDN 291


>At5g53895.1 68418.m06704 hypothetical protein
          Length = 129

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +1

Query: 361 IFDVKC-IASTYTKSFRKHHNSSLYLSRSFTS 453
           +F+VK  I + Y  S R+H+N++L  SR FTS
Sbjct: 4   LFNVKRGIINIYRTSPRQHNNNTLQFSRCFTS 35


>At5g37620.1 68418.m04531 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 361 IFDVKCIASTYTKSFRKHHNSSLYLSRSFT 450
           + DV+C A + T  ++ H +S  Y S ++T
Sbjct: 475 VIDVRCAAISDTLEYKSHQHSLYYYSTTYT 504


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,829
Number of Sequences: 28952
Number of extensions: 308758
Number of successful extensions: 714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)