Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0830
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0352 + 2541022-2542069,2542280-2542335                           34   0.075
11_05_0033 + 18500092-18501372,18502419-18502826,18502948-185029...    28   4.9  
03_01_0244 - 1900492-1901109,1901416-1902345                           28   6.5  

>06_01_0352 + 2541022-2542069,2542280-2542335
          Length = 367

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 426 QL*IIKTMMVINPFATSDNYRNTACTRWVSCFLRNTVARPPVAKGLNRL 280
           +L +++  M I PFA  D+   TACT W   F  +   +P   + LN L
Sbjct: 254 RLLLVRRRMQIRPFAKCDDLLETACTCWFDVFEADFTVQPCQWRRLNTL 302


>11_05_0033 + 18500092-18501372,18502419-18502826,18502948-18502990,
            18503236-18503282,18504582-18505901
          Length = 1032

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +2

Query: 302  TGGLATVFRRKQLTHRVQAVFL*LSLVAKGLITIIVLIIYNCLDRGRTHSPPGVLSGY*S 481
            T  LA    R  L     A+F+ ++L  K    + +L+     D+G TH PPG  S +  
Sbjct: 769  TNMLAIEGARMSLLGLYAAIFMIIALEIK--FELALLLREKAADKGVTHGPPGRSSAF-P 825

Query: 482  P*TSMTQMR--HPP*DISSKGLSIVTTATPAL 571
            P   + Q R  H     + K L+      PA+
Sbjct: 826  PKARLLQQRRAHAAPTFTIKRLAAEAAWMPAI 857


>03_01_0244 - 1900492-1901109,1901416-1902345
          Length = 515

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -3

Query: 589 VTPFGLKSGGSSCNYTETLRTDVSRWVAHLRHRCLWASVS 470
           + PFG  SG  SC       T V+ W+A L H   W   S
Sbjct: 449 LVPFG--SGRRSCPGKSLAMTTVTAWMATLLHEFEWTPAS 486


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,110,373
Number of Sequences: 37544
Number of extensions: 238415
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)