Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0830
(597 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g28070.2 68416.m03504 nodulin MtN21 family protein similar to... 33 0.19
At3g28070.1 68416.m03503 nodulin MtN21 family protein similar to... 33 0.19
At3g28130.1 68416.m03510 nodulin MtN21 family protein similar to... 31 0.44
At3g28100.1 68416.m03507 nodulin MtN21 family protein similar to... 30 1.0
At2g39180.1 68415.m04812 protein kinase family protein contains ... 28 5.4
At5g41280.1 68418.m05017 hypothetical protein contains Pfam prof... 27 7.2
At1g73230.1 68414.m08475 nascent polypeptide-associated complex ... 27 9.5
At1g17880.1 68414.m02212 nascent polypeptide-associated complex ... 27 9.5
>At3g28070.2 68416.m03504 nodulin MtN21 family protein similar to
MtN21 [Medicago truncatula] GI:2598575
Length = 268
Score = 32.7 bits (71), Expect = 0.19
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = +2
Query: 230 TGFIGHSYYEEVINKLLNLFNPFATGGLATVFRRKQLTHRVQAVFL*LSLVAKGLITIIV 409
TG+IG Y + +N P T LA +FR ++++ + ++ L LI +V
Sbjct: 5 TGYIGIEYSSPTLASAINNITPALTFILAIIFRMEKVSFKERSSLAKLMGTILSLIGALV 64
Query: 410 LIIYNCLDRGRTHSPPGV 463
+I Y+ SPP V
Sbjct: 65 VIFYHGPRVFLASSPPYV 82
>At3g28070.1 68416.m03503 nodulin MtN21 family protein similar to
MtN21 [Medicago truncatula] GI:2598575
Length = 360
Score = 32.7 bits (71), Expect = 0.19
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = +2
Query: 230 TGFIGHSYYEEVINKLLNLFNPFATGGLATVFRRKQLTHRVQAVFL*LSLVAKGLITIIV 409
TG+IG Y + +N P T LA +FR ++++ + ++ L LI +V
Sbjct: 97 TGYIGIEYSSPTLASAINNITPALTFILAIIFRMEKVSFKERSSLAKLMGTILSLIGALV 156
Query: 410 LIIYNCLDRGRTHSPPGV 463
+I Y+ SPP V
Sbjct: 157 VIFYHGPRVFLASSPPYV 174
>At3g28130.1 68416.m03510 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 269
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = +2
Query: 230 TGFIGHSYYEEVINKLLNLFNPFATGGLATVFRRKQLTHRVQAVFL*LSLVAKGLITIIV 409
TGFIG Y + ++ NP T LA +FR ++ + + ++ + L+ +V
Sbjct: 7 TGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKASFKEKSSVAKMVGTIVSLVGALV 66
Query: 410 LIIYNCLDRGRTHSPP 457
+++Y+ SPP
Sbjct: 67 VVLYHGPRVFTPSSPP 82
>At3g28100.1 68416.m03507 nodulin MtN21 family protein similar to
MtN21 [Medicago truncatula] GI:2598575
Length = 353
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +2
Query: 206 LLSRMTDRTGFIGHSYYEEVINKLLNLFNPFATGGLATVFRRKQLTHRVQAVFL*LSLVA 385
LL M TG+IG Y + ++ P T LA +FR ++++ + ++ +
Sbjct: 86 LLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTI 145
Query: 386 KGLITIIVLIIYN 424
LI +V+++Y+
Sbjct: 146 LSLIGALVVVLYH 158
>At2g39180.1 68415.m04812 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 776
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = +2
Query: 425 CLDRGRTHS----PPGVLSGY*SP*TSMT 499
C DRG T+ PPG +SGY P TS++
Sbjct: 52 CWDRGNTNRSLNRPPGEISGYSPPMTSLS 80
>At5g41280.1 68418.m05017 hypothetical protein contains Pfam
profile: PF01657 domain of unknown function
Length = 286
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 273 NCSTCLTLSLQEALLQC 323
NC+TCL L+LQE L QC
Sbjct: 209 NCTTCLKLALQE-LTQC 224
>At1g73230.1 68414.m08475 nascent polypeptide-associated complex
(NAC) domain-containing protein similar to SP|P20290
Transcription factor BTF3 (RNA polymerase B
transcription factor 3) {Homo sapiens}; contains Pfam
profile PF01849: NAC domain
Length = 165
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 272 KLLNLFNPFATGGLATVFRRKQLTHR 349
KL+ + N TGG TV R+K+ H+
Sbjct: 5 KLMKMANTVRTGGKGTVRRKKKAVHK 30
>At1g17880.1 68414.m02212 nascent polypeptide-associated complex
(NAC) domain-containing protein / BTF3b-like
transcription factor, putative similar to SP|P20290
Transcription factor BTF3 (RNA polymerase B
transcription factor 3) {Homo sapiens}; contains Pfam
profile PF01849: NAC domain; identical to cDNA
BTF3b-like factor GI:5912423
Length = 165
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 272 KLLNLFNPFATGGLATVFRRKQLTHR 349
KL+ + N TGG TV R+K+ H+
Sbjct: 5 KLMKMANTVRTGGKGTVRRKKKAVHK 30
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,567,888
Number of Sequences: 28952
Number of extensions: 195410
Number of successful extensions: 390
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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