Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0829
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    30   0.29 
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    27   2.7  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   4.8  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   6.3  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    26   6.3  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   6.3  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   8.3  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   8.3  

>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = -3

Query: 404 SSVPFHELFLGLDNRRF-KLVDRN-SY-LQAGNEA*SIV*WADNPSRRTVHP 258
           S+ P H L L LDN +F +L   N SY L A ++  S+   +++PSR  +HP
Sbjct: 706 SAYPHHNLALNLDNTQFGELGTSNISYPLSAPSDVGSLPRASNSPSRPVMHP 757


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 237 AVVQSCANRHFLHPLWCAVCCRSIRCPPGRLTSRILPGDRRTGIRTNKSRVQ 82
           AV+ SCA    L+P+      +S R  P    +R   G  RT I  ++ R Q
Sbjct: 393 AVIASCAVPGILNPIPLMTRSQSHRLIPHNFGNRFKDGSLRTDIPLSELRTQ 444


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
 Frame = -3

Query: 575 CSGDSEKVSVWSGDPHSTVLQCSSVF------YLWTGSGLQRF 465
           C G    +S+WS      +L C +VF        W+  GL  F
Sbjct: 296 CGGQDRSLSIWSSALPRPLLSCQNVFQKSIGDVCWSPDGLSLF 338


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 379 FSGLITEDSNSSTGIAICKPATKPEVSYSGQ 287
           F+  ITE+  S  GIA  +P TK ++S+  +
Sbjct: 46  FASPITEEIPSPDGIATPEPETKKKLSFGAR 76


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 204 ENDGWRRTEPPPGPILELRMYCPPG 278
           E +G+R + PPP  +L  R+  P G
Sbjct: 14  EPEGFRPSTPPPKEVLHTRVIVPNG 38


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 458 VRRISEGRSRSTNRKRSYIAGRWSVGRRTRRSPSPNPHYRS*TKQHFLQKTELHPL 625
           VR     ++ ST  KRS+ +   S G  +  S SP+P  +S   QH    T    L
Sbjct: 145 VRAFPIHKNASTGVKRSFFSSSMSNGAMSPPSHSPSPFLQS--SQHIPPSTPAQKL 198


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 482 SRSTNRKRSYIAGRWSVGRRTRRSPSPNPHYRS*TKQHFLQKTELHPLT 628
           S +TN  R+Y++        T+ S + +PH R  +       T   PLT
Sbjct: 327 SINTNVARNYLSSEKGYSAHTQNSSAQSPHPRVFSANSAFSTTSPPPLT 375


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 539 RTRR--SPSPNPHYRS*TKQHFLQKTELHPLTWAHTITTT*QEKM 667
           RT R  S SP+P +R  T+ H     +  P+T  HT   +  +KM
Sbjct: 258 RTSRQYSRSPSPDFR--TRNHQFHSRDSQPITQRHTDIESRLQKM 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,276,653
Number of Sequences: 5004
Number of extensions: 73919
Number of successful extensions: 213
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)