Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0829
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0118 - 8586731-8587220,8587331-8587846,8588842-8588906,858...    31   0.93 
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577...    30   1.6  
09_04_0208 + 15636354-15636639,15636747-15636858,15636969-15637260     30   2.2  
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054...    30   2.2  
03_01_0155 - 1239184-1239491,1240414-1240812,1241017-1241380           29   5.0  
04_04_0138 + 23067885-23068245,23068393-23068634                       28   8.7  

>05_03_0118 -
           8586731-8587220,8587331-8587846,8588842-8588906,
           8589483-8589989
          Length = 525

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 322 PATKPEVSYSGQTTLPGGQYILNSRIGPGGGSVLRQPSF 206
           P T+ EV   G   L G + +LN+R+ P  GS + QP F
Sbjct: 212 PVTQAEVQQIGNNLLQGMERLLNARL-PAAGSGVVQPPF 249


>04_03_0847 -
           20254736-20254933,20256127-20256201,20257538-20257717,
           20257802-20257869,20258563-20259125,20259198-20259235
          Length = 373

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
 Frame = +3

Query: 180 IPRTIKDAENDGWRRTEPPPGPILELRMYCPPGRVVCPLYDTSGFV-------AGLQIAI 338
           I R + +  ND      PPP P        PP RVV  + D  G++       A LQ A+
Sbjct: 11  IGRNLWETGNDAGGEMSPPPPP--------PPPRVVICVGDVHGYISKLESLWANLQSAL 62

Query: 339 PVDEFESSVI 368
           P D F ++++
Sbjct: 63  PPDAFATALV 72


>09_04_0208 + 15636354-15636639,15636747-15636858,15636969-15637260
          Length = 229

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 322 PATKPEVSYSGQTTLPGGQYILNSRIGPGGGSVLRQP 212
           P T+ EV   G   L   +++LN+R+   GG  ++ P
Sbjct: 19  PITRAEVQQIGNNLLQAMEHLLNARLPAAGGGAVQPP 55


>05_04_0028 +
           17302359-17302445,17303887-17303952,17305415-17305489,
           17305638-17305737,17305819-17305865,17305937-17305994,
           17306161-17306210,17306417-17306473,17306561-17306703,
           17306793-17306834,17307083-17307124,17308239-17308272,
           17308342-17308443,17310373-17310652,17311202-17311332,
           17311676-17311773,17312525-17312717
          Length = 534

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 24/61 (39%), Positives = 26/61 (42%)
 Frame = +2

Query: 380 KVREMVRCSRGRRTL*GLLDSHSILCVRRISEGRSRSTNRKRSYIAGRWSVGRRTRRSPS 559
           +VRE     R R    G   SHS    R  S  RS S +R RSY   R    R   RS S
Sbjct: 180 RVREYDSAKRSRSRSRGR--SHSRSISRSRSRSRSISRSRSRSYSRSRSPRSRSASRSHS 237

Query: 560 P 562
           P
Sbjct: 238 P 238


>03_01_0155 - 1239184-1239491,1240414-1240812,1241017-1241380
          Length = 356

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 372 PEKKFVK--WYAAPAEGEPSRDYW-TATQYYVSEESLKAGAGPQI 497
           P   F++  ++  P +GE   DYW  A Q     +  +AG GP +
Sbjct: 272 PRTAFIEDFFFTDPPQGEVGMDYWHAAPQVTQPTQETEAGQGPDV 316


>04_04_0138 + 23067885-23068245,23068393-23068634
          Length = 200

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/90 (25%), Positives = 32/90 (35%)
 Frame = +3

Query: 222 RTEPPPGPILELRMYCPPGRVVCPLYDTSGFVAGLQIAIPVDEFESSVIKPEKKFVKWYA 401
           RT     P+L  R+  PP    CP +D  G      +++P     S+            A
Sbjct: 98  RTRAVQLPLL-CRLDLPPAATACPGFDLGGAAPSPPVSVPRSTPNSTAPSTPTPVTVTRA 156

Query: 402 APAEGEPSRDYWTATQYYVSEESLKAGAGP 491
            P +  PS    + T  Y S   L A   P
Sbjct: 157 PPQQMTPSPKTSSQTPEYSSGLKLIADCVP 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,714,468
Number of Sequences: 37544
Number of extensions: 559465
Number of successful extensions: 1575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)