Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0829
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.13 
SB_44342| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-05)               29   2.9  
SB_52756| Best HMM Match : Albicidin_res (HMM E-Value=7.1)             29   5.1  
SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18)                    28   6.7  
SB_3976| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_56186| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)                   28   6.7  
SB_3040| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 28   8.9  

>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/35 (57%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 479 RSRSTNRKRSYIAGRWSVG-RRTRRSPSPNPHYRS 580
           RSRS +R RS    R S   RR RRS SP+PH+RS
Sbjct: 221 RSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRS 255


>SB_44342| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-05)
          Length = 608

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +2

Query: 470 SEGRSRSTNRKRSYIAGRWSVGRRTRRSPSPNP 568
           S+GRSRS ++  S  +G+ S  + +R+S SP+P
Sbjct: 213 SKGRSRSPSKSPSRKSGKKSGKKSSRKSRSPSP 245


>SB_52756| Best HMM Match : Albicidin_res (HMM E-Value=7.1)
          Length = 246

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +2

Query: 464 RISEGRSRSTNRKRSYIAGRWSVGRRTRRSPSPNPHYRS*TKQHFLQKTELHPLTWAHTI 643
           R+S+     TN+   Y+       + TRR  SPNP     T +H    TE    T  H  
Sbjct: 104 RVSKSEKNETNKTAEYVPRVSKEQKVTRRKFSPNPS----TPEHVPSTTEQVSSTTEHVP 159

Query: 644 TT 649
           +T
Sbjct: 160 ST 161


>SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18)
          Length = 530

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 116 RRSPGKIRLVRRPGGHRILLQHTAHHKGCRK 208
           R+ P K  ++ RPG HRI +     H G R+
Sbjct: 285 RKEPRKWEVLHRPGKHRIRISCILRHGGRRR 315


>SB_3976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 342 VDEFESSVIKPEKKFVKWYAAPAEGEPSRDYW 437
           V   +SSV  PE+K    + APAE E + +YW
Sbjct: 484 VSNLKSSVNNPEQKKTS-HLAPAEIEAAEEYW 514


>SB_56186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 342 VDEFESSVIKPEKKFVKWYAAPAEGEPSRDYW 437
           V   +SSV  PE+K    + APAE E + +YW
Sbjct: 199 VSNLKSSVNNPEQKKTS-HLAPAEIEAAEEYW 229


>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
          Length = 1056

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 364 TEDSNSSTGIAICKPATKPEVSYSGQTTLPGGQYILNSRIGPGGGS 227
           T  S++  G  + KP+T+P     G  + PG  + L  R   GGG+
Sbjct: 758 TSASSNWAGTGVPKPSTRPSTKARGTLSGPGPPF-LRERSQRGGGT 802


>SB_3040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 459 SEESLKAGAGPQIENGATLQDGGVWVAGPDAHLLRIPTTEAELNS 593
           S+E    G+ P+     TLQD G  V   +    R P+ E E+ S
Sbjct: 100 SDEESVPGSQPEASTSRTLQDAGAIVTVLETRESRAPSLEEEILS 144


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 231 PPPGPILELRMYCPPGRVV 287
           PPP PILEL    PPG V+
Sbjct: 205 PPPPPILELAAPPPPGSVL 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,570,623
Number of Sequences: 59808
Number of extensions: 622257
Number of successful extensions: 1514
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)