Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0829
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protei...    30   1.5  
AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2 pr...    30   1.5  
Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    28   5.9  
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    28   5.9  

>U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protein 2
           protein.
          Length = 131

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +3

Query: 480 GAGPQIENGATL-QDGGVWVAGPDAHLLRIPTTEAELNSTFFKKQNCIP*HGHTL 641
           G  P I+  A +  DG VW    DA+  R    E +  +  F   N +P  G  L
Sbjct: 13  GKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGTGADL 67


>AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2
           protein.
          Length = 131

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +3

Query: 480 GAGPQIENGATL-QDGGVWVAGPDAHLLRIPTTEAELNSTFFKKQNCIP*HGHTL 641
           G  P I+  A +  DG VW    DA+  R    E +  +  F   N +P  G  L
Sbjct: 13  GKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGTGADL 67


>Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 189 CAVC-CRSIRCPPGRLTSRILPGDRRTGIRTNKSRVQ 82
           C +C C   +CP  R  S    GD +TG+   KS  Q
Sbjct: 9   CQICTCGRHKCPHDRNASSFQLGDGKTGLSQEKSITQ 45


>Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical
           protein H03A11.2 protein.
          Length = 1218

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 189 CAVC-CRSIRCPPGRLTSRILPGDRRTGIRTNKSRVQ 82
           C +C C   +CP  R  S    GD +TG+   KS  Q
Sbjct: 9   CQICTCGRHKCPHDRNASSFQLGDGKTGLSQEKSITQ 45


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 94  LIRTDSSTTVSG*NSAGQTPWRTSNTSTAYRAP*RMQKMTVGAG 225
           L++  SS+T    N  G TP R    + AY    R   M +G G
Sbjct: 340 LVKKSSSSTSISLNGIGSTPTRQFEITQAYGGTIRGPPMAIGGG 383


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 461 RRISEGRSRSTNRKRSYIAGRWSVGRRTRRSPSPNPHYRS*TK-QHFLQ 604
           +R    RSRS++R RS +  R S  R   RSPSP   + S  + Q+ LQ
Sbjct: 112 KRSRRSRSRSSSRSRSPV--RESRRRSESRSPSPKRDFHSSMRNQYHLQ 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,708,535
Number of Sequences: 27780
Number of extensions: 456511
Number of successful extensions: 1234
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)