Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0828
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.34 
SB_51549| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)               28   9.6  

>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -2

Query: 186 YSQKKNSHMALIIKNSRTLINKNNAMLNL*CINIYFIHN*NKKILCNS 43
           + Q+++ H  +II N+  +IN NN ++N    N   I N N  I+ N+
Sbjct: 381 HQQQQHHHQNIIINNNNIIINNNNIIINNNINNNNIIINNNNIIIINN 428


>SB_51549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 630

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 207 MILLYTIYSQKKNSHMALIIKNSRTLINKNNA 112
           M+ L ++ +QKKN +   I+  S  ++ KNNA
Sbjct: 328 MLALKSVVTQKKNVNDTRILSCSTNIVQKNNA 359


>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
          Length = 413

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 537 SFTNFYNCLSFVPDWV*SF*KIKIYSCSHLFLIAYCCCRRPACS 668
           S   F +C + VP  + S   I +       +I +CCCRRP  S
Sbjct: 76  SVCQFGDCYNPVPAIIGSLVGIGVVVVIVTAIIYFCCCRRPVRS 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,423,638
Number of Sequences: 59808
Number of extensions: 408920
Number of successful extensions: 692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)