Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0828
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   7.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   7.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.6  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 532 SKLNVKRENQSLGPSPIRQR*IICNIIKRAYYYLGVLR 419
           S   ++R  Q++   P ++   ICNI KR Y  L  LR
Sbjct: 14  SLTRLRRHIQNVHTRPSKEP--ICNICKRVYSSLNSLR 49


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 157  SYYKKFTNTN*QKQCNVKFIMYKYLLHSQLKQE 59
            S+Y  F   + +  CN      +YLL   +KQ+
Sbjct: 957  SFYSSFLYKSSESSCNPDQKPTEYLLEDSMKQQ 989


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 556 IVYLSSQIGFKAFEK*KSILAR 621
           I+Y  S  G KAFE+ + +L +
Sbjct: 285 IIYEESNYGIKAFEELEELLGK 306


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 223 IISPPNDITIHNI*PKKKLTYGSYYKKFTNTN 128
           IIS  ++ TIHN        Y +Y K + N N
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYKKLYYNIN 112


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 377 YDINPAVLRLADWST*NSKIIICSFDD 457
           YD+   VL+L  W+    K+ +   D+
Sbjct: 162 YDVQTCVLKLGSWTYDGFKVDLRHMDE 188


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 223 IISPPNDITIHNI*PKKKLTYGSYYKKFTNTN 128
           IIS  ++ TIHN        Y + Y  + N N
Sbjct: 314 IISSLSNKTIHNNNNYNNNNYNNNYNNYNNNN 345


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 370 YLRQL*EPNKK*YKIGTSGVLSIDDLSPRRVLGF 269
           +L  + E N K Y+I   G +++DD    +V GF
Sbjct: 623 FLSSMDESNTKSYEIPLYGKMTLDD----KVFGF 652


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 370 YLRQL*EPNKK*YKIGTSGVLSIDDLSPRRVLGF 269
           +L  + E N K Y+I   G +++DD    +V GF
Sbjct: 623 FLSSMDESNTKSYEIPLYGKMTLDD----KVFGF 652


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 233 INPHNLTTK*YYYT 192
           INP N+ TK Y YT
Sbjct: 36  INPINVYTKAYIYT 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,543
Number of Sequences: 438
Number of extensions: 4329
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)