Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0827
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    29   0.53 
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   1.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.0  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   5.0  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    26   5.0  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   6.5  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    25   8.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   8.7  

>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +2

Query: 149 FFHFWNDDFKFEHRELGCAIQCMSRH--FNLLTDSSRMHHENTDKFIKSFPN---GEILS 313
           +  FWND   +  R  GC +  ++      +  D +R      D+ ++       GE+L 
Sbjct: 77  YLSFWNDSISYSLR--GCILMELAFRGKLRMQKDVNRKRFPLADRVVELVDEKLTGEVLL 134

Query: 314 QKMIDMIHTCE 346
            + I MIHT E
Sbjct: 135 DEAIKMIHTSE 145


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 119  SQLTEEKMEEFFHFWNDDFKFEHRELGCAIQCMSRHFNLLTDS 247
            S+LT E    FFHF  DD   +H      +  ++ HFN+  D+
Sbjct: 1619 SELTSESGCLFFHFEKDDSGIDH------VTAVASHFNVWPDT 1655


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/79 (21%), Positives = 36/79 (45%)
 Frame = -2

Query: 528 KLL*RKQVVQLIHLSASDSIMNSANISSIEGANPDLLHASLKHSATLRIRQQWSGSESNF 349
           KLL  K++++++  +    +  S  +  +E   P++    + + A L I Q W  +E   
Sbjct: 634 KLLEEKELLEML-ATLFLHLDPSVFVEILESEFPNIFECLVDNLALLHIFQFWMSNEVTS 692

Query: 348 FSHVCIISIIFCDRISPFG 292
            +   I+    CD ++  G
Sbjct: 693 VNCTGIVLSFCCDNLAKIG 711


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = -2

Query: 492 HLSASDSIMNSANISSIEGANPDLLHASLKHSATLRIRQQWSGSESNFFSHVCIISIIFC 313
           +LSA   +++++N+           + S    + L+I +Q++ ++  FF+ +C++    C
Sbjct: 101 YLSALSLLLSNSNVQPFVNK----FYTSTVFPSFLQILKQYNVAQEEFFAILCVV----C 152

Query: 312 DRISPFGKDLMNL--SVFSWCI 253
           D +  +  +L  L  + F  CI
Sbjct: 153 DSLEIYHSNLSTLLPNNFELCI 174


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 181 RTQRAGLCDPVHEQTFQPPHGF 246
           R  +  L D +HE TF P  G+
Sbjct: 55  RDSKVSLADYIHESTFDPSKGY 76


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 59   YVMKDVTLGFGQALEQCREESQLTEEKMEEF-FHFW 163
            Y M +V +     L+ CR    LT  K+EEF  H W
Sbjct: 1525 YCMPNVAISKETLLDACRLLDFLTALKLEEFALHEW 1560


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 256 APREHRQIHQVLSERRNPITEDDRYDTHVRKKV 354
           A  E  QI ++L E+R P+ E+D     +R  V
Sbjct: 212 AQSEGFQIEKILEEKRTPMFEEDPGAPEIRATV 244


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 432 NPDLLHASLKHSATLRIRQQWSGSESNF 349
           NPD++ +S+K S  L    +WS   SNF
Sbjct: 541 NPDIISSSVKQSLLLDGFFRWSQHCSNF 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,692
Number of Sequences: 5004
Number of extensions: 47419
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)