Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0827
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0371 - 2851186-2851491,2851582-2851765,2851967-2852156,285... 32 0.41
12_01_0265 + 1932529-1932545,1932578-1932785,1933254-1933333,193... 29 2.2
04_02_0037 + 9039299-9039497,9040018-9040166 29 2.2
10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647 29 2.9
03_01_0555 + 4132630-4132923,4133514-4133771,4134125-4134249,413... 28 5.0
02_01_0549 - 4038699-4038753,4039225-4039514,4039673-4039970,404... 28 5.0
02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175... 28 5.0
05_03_0105 - 8441106-8441327,8443355-8443462,8443606-8443671,844... 28 6.7
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897... 28 6.7
08_01_0045 + 322679-323347 27 8.8
06_03_1364 - 29590251-29590832 27 8.8
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 27 8.8
>12_01_0371 -
2851186-2851491,2851582-2851765,2851967-2852156,
2853375-2853613,2853862-2853947,2854720-2854827,
2854929-2855031,2855152-2855213
Length = 425
Score = 31.9 bits (69), Expect = 0.41
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = -2
Query: 444 IEGANPDLLHASLKHSATLRIRQQWSGSESNFFSHVCIISIIFCDRISPFGKDLMNLSVF 265
+E ++ + + AS++ + ++ GS F I S +F + M+LS F
Sbjct: 118 LERSDLETILASIRETIFSENKEAGEGSNKRTFE-AFINSAVFSKDAEGVARKSMSLSDF 176
Query: 264 -SWCILLESVRR-LKCLLM 214
SWCIL+ S+R+ L LLM
Sbjct: 177 RSWCILIPSLRKFLGSLLM 195
>12_01_0265 +
1932529-1932545,1932578-1932785,1933254-1933333,
1933394-1933916
Length = 275
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 113 EESQLTEEKMEEFFHFWNDDFKFEHRELGCAIQCMSRHFNLLTDSSRMHHENTDKFIKSF 292
EE Q + E++EE F ++ D L +Q + R L D+ HE ++ +K +
Sbjct: 23 EEKQASWEELEEAFSVFDGDGDGFISPL--ELQSVMRRLGLQHDAG---HEECERMLKKY 77
Query: 293 PNGEILSQKM 322
NG + QK+
Sbjct: 78 MNGLAMGQKL 87
>04_02_0037 + 9039299-9039497,9040018-9040166
Length = 115
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 284 KSFPNGEILSQKMIDMIHTCEKKFDSEPDHCWRILRVAECFK 409
KS+P E + +D +KK D E D WR ++ A+C K
Sbjct: 70 KSYPTYENRQNQPVDGDDMDDKKDDGEEDIMWRGIQRAKCSK 111
>10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647
Length = 263
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 137 KMEEFFHFWNDDFKFEHRELGCAIQCMSRHFNLLTDSSRMHHENTDKFI 283
K E+ H W E E+GC ++CMS L+ H +TDKF+
Sbjct: 212 KCEDQVHSW---CSIETGEIGCCVRCMSYEIYLV-------HPSTDKFL 250
>03_01_0555 +
4132630-4132923,4133514-4133771,4134125-4134249,
4134789-4134990,4135172-4135297,4135404-4135660,
4135968-4136075,4136142-4136310,4136378-4136543,
4136967-4136998,4137256-4137579,4137683-4137757,
4138093-4138162,4138228-4138385,4138872-4139021
Length = 837
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 224 HFNLLTDSSRMHHENTDKFIKSF 292
HF ++ RM+H NT +F+K F
Sbjct: 708 HFTVMNYIGRMNHMNTPEFVKEF 730
>02_01_0549 -
4038699-4038753,4039225-4039514,4039673-4039970,
4040779-4040849,4040966-4041079,4041166-4041240,
4041347-4041405,4041870-4041912
Length = 334
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 230 NLLTDSSRMHHENTDKFIKSFPNGEILSQKMIDMIHTCEKKFD 358
N+ S R H D F K+F NG ++ K +D + K+ D
Sbjct: 184 NISWKSDREHKFGRDVFPKNFQNGSLIGGKTLDPNKSLSKQED 226
>02_01_0266 -
1758439-1758599,1758682-1758769,1759363-1759564,
1759664-1759800,1760169-1760268,1760350-1760522,
1760797-1760941,1761018-1761139,1761225-1761470,
1761962-1762182,1762278-1762338,1762409-1762487,
1762572-1762651,1763221-1763292,1763382-1763449,
1763550-1763588,1763828-1763903,1763992-1764006
Length = 694
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 292 KGLDEFVGVLVVHPAGIREEVEMSAHALDRTAQLSV 185
K E + VH A ++EE E+S +DR +LS+
Sbjct: 335 KSKSELAEISKVHQAKLKEEEEISKSIMDREKRLSI 370
>05_03_0105 -
8441106-8441327,8443355-8443462,8443606-8443671,
8443915-8443923
Length = 134
Score = 27.9 bits (59), Expect = 6.7
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +2
Query: 296 NGEILSQKMIDMIHTCEKKFDSEPDHCWRILRVAECFKDACNKSGLAP----SMELILAE 463
+GE S+K I TC + S + +R R AE NKSG+A + EL +AE
Sbjct: 26 DGEFQSRKWRSNIQTCREVQISREEAEFRTYRFAENMHCNANKSGVADYTCHAKELGVAE 85
Query: 464 FIMESEADK*INWTTC 511
+ + D +N C
Sbjct: 86 VPRQRQIDL-VNDNVC 100
>03_05_0172 -
21488504-21488752,21488862-21489611,21489691-21489789,
21489862-21490776,21490847-21490976,21491438-21491583,
21491801-21491896,21492521-21492613,21492702-21492755,
21492897-21492956,21493046-21493171,21493283-21493366,
21493444-21493587,21493667-21493963
Length = 1080
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +2
Query: 305 ILSQKMIDMIHTCEKKFDSEPDHCWRILRVAECFKDACNKSGLAPSMELILAEFIMESEA 484
I S++ ++ CE++ D + + + +C +DA N G P+ EL+ + E
Sbjct: 723 IASKRQTELEALCEEQADKIKELSNLVDQYKKCSEDAQNSDGTEPTKELVDEAKVGEQHG 782
Query: 485 DK*IN 499
+ +N
Sbjct: 783 ELNVN 787
>08_01_0045 + 322679-323347
Length = 222
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 65 MKDVTLGFGQALEQCREESQLTEEKMEEFFHFWNDD 172
+ D GF E+ EE + EE+M+ + NDD
Sbjct: 93 LSDYAAGFCDGAEEEEEEEEEEEERMDSLWEDLNDD 128
>06_03_1364 - 29590251-29590832
Length = 193
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 218 SCTGSHSPALCVRT*SHHSRSGRTPPSSLR 129
SC + PA+CV++ + + +G PP S R
Sbjct: 29 SCRATQYPAVCVQSLASYGGAGAPPPRSPR 58
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 259 VHPAGIREEVEMSAHALDRTAQLSV 185
VH +REE E+S +DR QLS+
Sbjct: 245 VHQTKLREEEEISKSIMDRQKQLSI 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,525,323
Number of Sequences: 37544
Number of extensions: 318218
Number of successful extensions: 935
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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