Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0827
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)                     32   0.32 
SB_14851| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-39)                 30   1.3  
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_41817| Best HMM Match : DUF773 (HMM E-Value=0.6)                    28   6.8  
SB_41951| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_49818| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)                    27   9.0  
SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)                   27   9.0  
SB_46020| Best HMM Match : PHD (HMM E-Value=9.3e-12)                   27   9.0  
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.0  

>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
          Length = 1998

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 13/51 (25%), Positives = 31/51 (60%)
 Frame = +2

Query: 230  NLLTDSSRMHHENTDKFIKSFPNGEILSQKMIDMIHTCEKKFDSEPDHCWR 382
            NL+ D++ +  +NTDK  +   N E+  +++ +++   +K+ ++ PD  W+
Sbjct: 1267 NLIKDNALLQKDNTDKSTE-IQNMELEIKRLENIVSDLQKELENRPDDDWK 1316


>SB_14851| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-39)
          Length = 349

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -2

Query: 423 LLHASLKHSATLRIRQQWSGSESNFFSHVCIISIIFCDRISPFGKDLMNLSVFSWCI 253
           LL     HS  + + Q +  S      H C+  +I+C  +S F  D   +  F +C+
Sbjct: 256 LLLQMFGHSKNVIVSQVYRASALATVFHSCVNPLIYCAVLSRFRDDFFRIGKFIFCM 312


>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 167 DDFKFEHRELGCAIQCMSRHFNLLTDSSRMHHENTDKFIKSFPNGEILSQK 319
           DD   E RE    I+CM     +  D ++M  ENT KF+      E+  ++
Sbjct: 449 DDLDHEVREKQELIRCMREVKAIEADMAQMVQENTSKFVDKLKKKELTEKE 499


>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 214  HEQTFQPPHGFQQDAPREHRQIHQVLSERRNPITEDDRYDTHVR 345
            H+ +  P H  +QD P  H+  H V+  ++   TED +    V+
Sbjct: 902  HDASTSPEHHGKQDEPISHQGNHTVVPPQQAHSTEDSKPSQDVK 945


>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -2

Query: 414 ASLKHSATLRIRQQWSGSESNFFSHVCIISIIFCDRISPFGKDLMNLS-VFSWCILLESV 238
           A LK    LR+ + W   E   F H+  +  +    +SP  +    LS V+   +LL+  
Sbjct: 740 AQLKKFYLLRLNKSWDHVEKKIFQHIGELFHLLSSSLSPLSQSSSPLSAVYGVDVLLQ-- 797

Query: 237 RRLKCLLMHWIAQPS 193
             L+ L++   A PS
Sbjct: 798 ENLEPLIIGVNALPS 812


>SB_41817| Best HMM Match : DUF773 (HMM E-Value=0.6)
          Length = 653

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 335 HTCEKKFDSEPDHCWRILRVAECFKDACNKSGLAPSMELILAEFIME 475
           HT   K+D    HC  ILR+A C  +     GLA S++  L E + E
Sbjct: 7   HTVFCKYDCTAKHCELILRLASCPDNKRLVKGLA-SLKQSLYEKLQE 52


>SB_41951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 335 HTCEKKFDSEPDHCWRILRVAECFKDACNKSGLAPSMELILAEFIME 475
           HT   K+D    HC  ILR+A C  +     GLA S++  L E + E
Sbjct: 7   HTVFCKYDCTAKHCELILRLASCPDNKRLVKGLA-SLKQSLYEKLQE 52


>SB_49818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 426 DLLHASLKHSATLRIRQQWSGSESNFFSHVC 334
           D LHAS  HS T R+ Q  +G+E    S +C
Sbjct: 8   DQLHASSSHSPTERLCQHLAGTEIK-LSEIC 37


>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
          Length = 809

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
 Frame = +2

Query: 95  ALEQCREESQLTEE----KMEEFFHFWNDDFKFEHR--ELGC--AIQCMSR-HFNLLTDS 247
           AL +  EE ++TEE    +M+E F F +D+ + +HR  E  C   +  + R   N   D 
Sbjct: 265 ALSEDLEEGEVTEEDSADEMDECFKFRSDENEVDHRAKERKCRRTLASLQRLRMNKEDDE 324

Query: 248 SRMHHENTDKFIKSFPNGEILSQKMIDMIHT 340
           S    + +   + S  +G     +   + HT
Sbjct: 325 SDARGDLSSAIVSSVASGNTSETRQRGLRHT 355


>SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)
          Length = 1828

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -2

Query: 477  DSIMNSANISSIEGANPDLLHASLKHSATLRIRQQWSGSESNFFSHVCIISIIFCDRISP 298
            DS+ +      IE    DLL  SL     + ++QQ +GS+   FS      + F    S 
Sbjct: 1742 DSLYHDVISQEIEEQTNDLLGGSLISLDFVPVQQQSNGSDCGVFSIAFATCLAFATNPSH 1801

Query: 297  FGKDL 283
            F  D+
Sbjct: 1802 FTFDI 1806


>SB_46020| Best HMM Match : PHD (HMM E-Value=9.3e-12)
          Length = 824

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -2

Query: 477 DSIMNSANISSIEGANPDLLHASLKHSATLRIRQQWSGSESNFFSHVCIISIIFCDRISP 298
           DS+ +      IE    DLL  SL     + ++QQ +GS+   FS      + F    S 
Sbjct: 738 DSLYHDVISQEIEEQTNDLLGGSLISLDFVPVQQQSNGSDCGVFSIAFATCLAFATNPSH 797

Query: 297 FGKDL 283
           F  D+
Sbjct: 798 FTFDI 802


>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1726

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +2

Query: 239  TDSSRMHHENTDKFIKSFPNGEILSQKMIDMIHTC--EKKFDSEPDHCWRILRVAECFKD 412
            TD   +++EN D   ++F   ++ +  + D+ HT   E            + R+ E  + 
Sbjct: 1578 TDRVYLYNENGDPLCENFLTNDVCNNNLADLPHTLQHEHNLKQAKRMVQEMTRLGEGMRR 1637

Query: 413  ACNKSGL 433
               KSGL
Sbjct: 1638 LVRKSGL 1644


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,992,877
Number of Sequences: 59808
Number of extensions: 358885
Number of successful extensions: 924
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)