Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0827
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              29   0.027
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.44 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.8  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 29.5 bits (63), Expect = 0.027
 Identities = 17/106 (16%), Positives = 50/106 (47%)
 Frame = +2

Query: 11  VVVLTVNLLQGALTDVYVMKDVTLGFGQALEQCREESQLTEEKMEEFFHFWNDDFKFEHR 190
           V++  + +  GA+T     +++  G       C  E+  +++ ++E +   N +   E  
Sbjct: 5   VIIFAICVCVGAMTH----EELKTGIQTLQPICVGETGTSQKIIDEVY---NGNVNVEDE 57

Query: 191 ELGCAIQCMSRHFNLLTDSSRMHHENTDKFIKSFPNGEILSQKMID 328
            +   ++CM + FN++ ++   + +NT   +++  +     Q +++
Sbjct: 58  NVQSYVECMMKKFNVVDENGNFNEKNTRDIVQAVLDDNETDQLIVE 103


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 584 NKLYFLNTNQTFQENSV 534
           N LYF+N N  ++EN++
Sbjct: 80  NVLYFINKNDKYEENTI 96


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 247 QQDAPREHRQIHQVLSERRNPITEDD 324
           QQ   ++ +Q  Q   ++R P+T DD
Sbjct: 838 QQQPQQQQQQQQQQQQQQRGPMTNDD 863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,969
Number of Sequences: 438
Number of extensions: 3361
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)