Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0827
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15200.1 68416.m01921 pentatricopeptide (PPR) repeat-containi... 31 0.79
At5g20360.1 68418.m02422 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.2
At5g14340.1 68418.m01676 myb family transcription factor (MYB40)... 29 3.2
At5g22610.1 68418.m02642 F-box family protein contains F-box dom... 28 4.2
At5g04320.1 68418.m00424 expressed protein 28 4.2
At2g31530.1 68415.m03852 secY family protein low similarity to S... 28 4.2
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f... 28 5.6
At5g56560.1 68418.m07058 F-box family protein contains F-box dom... 27 7.4
At4g31270.1 68417.m04438 expressed protein 27 7.4
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 27 9.7
At3g23020.1 68416.m02902 pentatricopeptide (PPR) repeat-containi... 27 9.7
At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi... 27 9.7
>At3g15200.1 68416.m01921 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 523
Score = 30.7 bits (66), Expect = 0.79
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 348 FSHVCIISIIFCDRISPFGKDL--MNLSVFSWCIL 250
+ HV +FC R FG D+ MN+ + WC+L
Sbjct: 226 YKHVEFAETLFCSRRREFGCDIKAMNMILNGWCVL 260
>At5g20360.1 68418.m02422 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein / tetratricopeptide repeat
(TPR)-containing protein contains Pfam profiles PF00564:
PB1 domain, PF00515: TPR Domain
Length = 809
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 332 IHTCEKKFDSEPDHCWRILRVAECFKDACNKSGLA 436
IH C+ PDH +L+ A C+ +A NK LA
Sbjct: 186 IHECDLALSVTPDHNKALLKRARCY-EALNKLDLA 219
>At5g14340.1 68418.m01676 myb family transcription factor (MYB40)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 263
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 185 HRELGCAIQCMSRHFNLLTDSSRMHHENT--DKFIKSFPNGEILSQKMIDMIHTCEKKFD 358
H +LG ++ HF+ TD+ +H NT K +K + M D+ H + D
Sbjct: 82 HSQLGNRWSKIASHFSGRTDNEIKNHWNTKIKKKMKHLGLDPATHKPMNDITHQTDPNQD 141
Query: 359 SEPDHC 376
+P+ C
Sbjct: 142 KKPNMC 147
>At5g22610.1 68418.m02642 F-box family protein contains F-box domain
Pfam:PF00646
Length = 472
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 383 ILRVAECFKDACNKSGLAPSMELILAEFIMESEADK*INW-TTCFRYNNLTAHCFLERF 556
+LR+A F N++ L +EL + + E +N CFR N +T FL+ F
Sbjct: 402 VLRLASSFLRRGNQAVLKDILELPRRSSMCQIEVFNALNGHALCFRKNKITGRVFLDYF 460
>At5g04320.1 68418.m00424 expressed protein
Length = 419
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 167 DDFKFEHRELGC--AIQCMSRHFNLLTDSSRMHHENTDKFIKSFPNGEILSQKMIDMIHT 340
D K ELGC A+ + +H R HHE+ DK S +G+ S ++ D+ H
Sbjct: 54 DRLKDLQHELGCKNALLKVKKHLEEQV-LPRTHHESKDKVSASASDGDCKSFQVHDIKHK 112
Query: 341 CEKK 352
K+
Sbjct: 113 DTKR 116
>At2g31530.1 68415.m03852 secY family protein low similarity to
SP|P31159 Preprotein translocase secY subunit
{Synechococcus sp}; contains Pfam profile PF00344:
eubacterial secY protein
Length = 556
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/75 (21%), Positives = 32/75 (42%)
Frame = -2
Query: 390 LRIRQQWSGSESNFFSHVCIISIIFCDRISPFGKDLMNLSVFSWCILLESVRRLKCLLMH 211
+++R++ S++C+++I+F L S+FS+C V LL+
Sbjct: 216 VKLRKEGLDGHEKIKSYMCMVAIVFLRYSGSISGGLHFSSIFSFCSHCPHVMMTSSLLVC 275
Query: 210 WIAQPSSLCSNLKSS 166
+ LC + S
Sbjct: 276 GAMTMTWLCDTISES 290
>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc
finger (ZZ type) family protein contains Pfam profiles
PF02135: TAZ zinc finger, PF00569: Zinc finger, ZZ type
Length = 1706
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 214 HEQTFQ-PPHGFQQDAPREHRQIHQVLSERR 303
H+Q FQ PP+ FQQ + +Q Q L++R+
Sbjct: 406 HQQQFQQPPNRFQQQPNQIQQQQQQFLNQRK 436
>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
Pfam:PF00646
Length = 607
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 390 LRIRQQWSGSESNFFSHVCIISIIFCDRISPFGKDLMNLSVFSWCILLESV 238
L++ Q++S S+ NF+ V + + RI FGK L CI L+ +
Sbjct: 84 LKLNQKYSASDINFWVQVAVNRSVRELRIDLFGKTLELPCCLCSCITLKEL 134
>At4g31270.1 68417.m04438 expressed protein
Length = 294
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 225 CL-LMHWIAQPSSLCSNLKSSFQKW 154
CL L++ IA + CSN SSFQKW
Sbjct: 24 CLVLVNEIAAVEADCSNALSSFQKW 48
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = -2
Query: 495 IHLSASDSIMNSANISSIEGANPDLLHASLKHSATLRIRQQWSGSESNFFSHVCIISIIF 316
+H +A ++++ + GANP +L +K + + + +S SH+C+ S
Sbjct: 82 LHHAAKRGLVHTVKLLLSHGANPLVLDDDVKTALEVARDEGYSNVVRAIESHICLFS--G 139
Query: 315 CDRISPFGKDLMNL 274
C R G L+NL
Sbjct: 140 CMR-EYSGSSLLNL 152
>At3g23020.1 68416.m02902 pentatricopeptide (PPR) repeat-containing
protein low similarity to leaf protein [Ipomoea nil]
GI:3107905; contains Pfam profile PF01535: PPR repeat
Length = 842
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 378 QQWSGSESNFFSHVCIISIIFCDRISPFGK 289
++WS E+ SHVC+ S + I +GK
Sbjct: 281 KKWSCDENKADSHVCLSSYTYNTMIDTYGK 310
>At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1311
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 377 WRILRVAECFKDACNKSGLAPSMELILAEFIMESEADK*INWTTC 511
W R+ + + D C PSM+L+ +I E E D IN + C
Sbjct: 806 WVHKRLMKLYMDCCQSLSEKPSMKLLKKLYISEVEDD--INVSEC 848
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,532,134
Number of Sequences: 28952
Number of extensions: 253591
Number of successful extensions: 736
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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