Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0826
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    30   0.47 
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    28   1.4  
SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyce...    26   5.8  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   7.6  

>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -3

Query: 395 LF*LIHSIEFYNF*MKFILYKLLLMICNVHLNTYCCSQSTYRLKTNIIKLGKIYKSLNN 219
           +F L++ I  Y      +LY ++ ++C         SQS  ++   ++K    Y++LN+
Sbjct: 208 VFSLLNCIISYGRISSAVLYSIVEVVCRAKFGLVASSQSAQQIVEKLLKTATKYEALNS 266


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 445 DYRLTEKFTEVLAWCRSDRAILK 513
           D  L ++  EVL+WC   RAILK
Sbjct: 163 DSILQQELKEVLSWCSEHRAILK 185


>SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +2

Query: 347 ISFKNCKTQYYELVKTS 397
           +SFKNC+ + Y+LV+T+
Sbjct: 191 LSFKNCEFRIYDLVQTT 207


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 6/26 (23%), Positives = 17/26 (65%)
 Frame = +1

Query: 88  KNKLHINNCIVFFLMNCLINNAQHKS 165
           +N ++ +NC  ++++NC++     K+
Sbjct: 791 RNYINFSNCFTYWIINCILEKKNTKA 816


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,188
Number of Sequences: 5004
Number of extensions: 59463
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)