Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0826
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   1.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   1.1  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          25   1.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    24   2.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.5  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   8.1  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 18  QNIQKYTKNKFNFSNKTIMIDNVQKQTTY 104
           +N+ KYT  + NF   +I    V K  TY
Sbjct: 433 ENLPKYTTEELNFPGVSIESVTVDKLITY 461


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 18  QNIQKYTKNKFNFSNKTIMIDNVQKQTTY 104
           +N+ KYT  + NF   +I    V K  TY
Sbjct: 433 ENLPKYTTEELNFPGVSIESVTVDKLITY 461


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 18  QNIQKYTKNKFNFSNKTIMIDNVQKQTTY 104
           +N+ KYT  + NF   +I    V K  TY
Sbjct: 59  ENLPKYTTEELNFPGVSIESVTVDKLITY 87


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 166 CFYVAHYLLDNSLKKIQYNY*YV 98
           C Y  +Y  +N+ KK+ YN  Y+
Sbjct: 311 CNYSNNYYNNNNYKKLYYNINYI 333


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 353 MKFILYKLLLMICNVHLNTYCCSQSTYRLK 264
           M+F LY + + IC +++ ++   +   RL+
Sbjct: 118 MEFQLYPMDIQICPIYIESFSYHKQKLRLR 147


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +2

Query: 281 SENNSTCSGVHYKSLITIYTK*ISFKNCKTQYYELV 388
           S NNS  +  +Y +    Y    +    K QYY ++
Sbjct: 83  SNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYYNII 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,192
Number of Sequences: 438
Number of extensions: 4518
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)