Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0825
(788 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44680.1 68416.m04805 histone deacetylase, putative similar t... 262 2e-70
At4g38130.1 68417.m05384 histone deacetylase (RPD3A) identical t... 258 2e-69
At5g63110.1 68418.m07923 histone deacetylase, putative similar t... 234 4e-62
At5g35600.1 68418.m04238 histone deacetylase, putative (HDA7) si... 190 9e-49
At5g61060.1 68418.m07662 histone deacetylase family protein simi... 46 3e-05
At5g26040.2 68418.m03099 histone deacetylase family protein (HDA... 42 4e-04
At5g61070.1 68418.m07663 histone deacetylase family protein (HDA... 39 0.004
At4g33470.1 68417.m04754 histone deacetylase family protein simi... 36 0.023
At1g08460.1 68414.m00936 histone deacetylase family protein (HDA... 34 0.12
At3g18520.2 68416.m02354 histone deacetylase family protein simi... 29 2.7
At3g18520.1 68416.m02353 histone deacetylase family protein simi... 29 2.7
At3g01550.1 68416.m00085 triose phosphate/phosphate translocator... 29 4.6
At5g14080.1 68418.m01647 pentatricopeptide (PPR) repeat-containi... 28 6.1
At5g54090.1 68418.m06734 DNA mismatch repair MutS family protein... 28 8.1
At5g16100.1 68418.m01881 hypothetical protein 28 8.1
>At3g44680.1 68416.m04805 histone deacetylase, putative similar to
histone deacetylase-1 (HD-1) [Gallus gallus] GI:2791684;
contains Pfam profile PF00850: Histone deacetylase
family; identical to cDNA histone deacetylase partial
cds GI:21637258
Length = 426
Score = 262 bits (641), Expect = 2e-70
Identities = 102/173 (58%), Positives = 140/173 (80%)
Frame = +1
Query: 268 TQQRVAYFYNPDVGNFHYGPGHPMKPHRLAVTHCLVLKYGLHKKMQIYKPYRASAHDMCR 447
++ +++YFY+ DVG+ ++GP HPMKPHRL +TH L+L YGLH KM++Y+P++A +M +
Sbjct: 3 SKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEMAQ 62
Query: 448 FHSEDYIEFLQNVTPQNIQSYSKDLLHYNVGDDCPVFEGLFDFCSMYTGASLEGAMKLNN 627
FHS DY+EFLQ + P+N + ++ YN+G+DCPVFE LF+FC +Y G +++ A +LNN
Sbjct: 63 FHSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRLNN 122
Query: 628 NTCDIAINWSGGLHHAKKFEPSGFCYVNDIVIAILELLKYHPRVLYIDIDVHH 786
CDIAINW+GGLHHAKK + SGFCY+ND+V+ ILELLK+HPRVLYIDIDVHH
Sbjct: 123 KLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHH 175
>At4g38130.1 68417.m05384 histone deacetylase (RPD3A) identical to
SP|O22446 Histone deacetylase (HD) {Arabidopsis
thaliana}
Length = 501
Score = 258 bits (633), Expect = 2e-69
Identities = 104/172 (60%), Positives = 138/172 (80%)
Frame = +1
Query: 271 QQRVAYFYNPDVGNFHYGPGHPMKPHRLAVTHCLVLKYGLHKKMQIYKPYRASAHDMCRF 450
+++V YFY+P+VGN++YG GHPMKPHR+ +TH L+ YGL + MQ+ KP+ A D+CRF
Sbjct: 16 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRF 75
Query: 451 HSEDYIEFLQNVTPQNIQSYSKDLLHYNVGDDCPVFEGLFDFCSMYTGASLEGAMKLNNN 630
H++DY+ FL+++TP+ Q + L +NVG+DCPVF+GL+ FC Y G S+ G++KLN+
Sbjct: 76 HADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGSVKLNHG 135
Query: 631 TCDIAINWSGGLHHAKKFEPSGFCYVNDIVIAILELLKYHPRVLYIDIDVHH 786
CDIAINW+GGLHHAKK E SGFCYVNDIV+AILELLK H RVLY+DID+HH
Sbjct: 136 LCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHH 187
>At5g63110.1 68418.m07923 histone deacetylase, putative similar to
SP|O22446 Histone deacetylase (HD) {Arabidopsis
thaliana}; contains Pfam profile PF00850: Histone
deacetylase family
Length = 471
Score = 234 bits (573), Expect = 4e-62
Identities = 100/174 (57%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Frame = +1
Query: 271 QQRVAYFYNPDVGNFHYGPGHPMKPHRLAVTHCLVLKYGLHKKMQIYKPYRASAHDMCRF 450
++RV+YFY P +G+++YG GHPMKPHR+ + H L++ Y LH++++I +P A A D+ RF
Sbjct: 18 KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRRLEISRPSLADASDIGRF 77
Query: 451 HSEDYIEFLQNVTPQNI--QSYSKDLLHYNVGDDCPVFEGLFDFCSMYTGASLEGAMKLN 624
HS +Y++FL +V+P+++ S +++L +NVG+DCPVF+GLFDFC G S+ A+KLN
Sbjct: 78 HSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLN 137
Query: 625 NNTCDIAINWSGGLHHAKKFEPSGFCYVNDIVIAILELLKYHPRVLYIDIDVHH 786
DIAINW GGLHHAKK E SGFCYVNDIV+ ILELLK RVLYIDIDVHH
Sbjct: 138 RQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFKRVLYIDIDVHH 191
>At5g35600.1 68418.m04238 histone deacetylase, putative (HDA7)
similar to SP|O22446 Histone deacetylase (HD)
{Arabidopsis thaliana}; contains Pfam profile PF00850:
Histone deacetylase family
Length = 409
Score = 190 bits (463), Expect = 9e-49
Identities = 91/178 (51%), Positives = 119/178 (66%), Gaps = 6/178 (3%)
Frame = +1
Query: 271 QQRVAYFYNPDVGNFHYGPGHPMKPHRLAVTHCLVLKYGLHKKMQIYKPYRASAHDMCRF 450
++RV+YFY P +G+++YG P KP R+ VTH L+L Y LH+ M+I P A A D +F
Sbjct: 9 KRRVSYFYEPMIGDYYYGVNQPTKPQRIRVTHNLILSYNLHRHMEINHPDLADASDFEKF 68
Query: 451 HSEDYIEFLQNVTPQNIQ----SYSKDLLHYNVGDDC--PVFEGLFDFCSMYTGASLEGA 612
HS +YI FL++VTP+ + S S++L +NV D PVF LFD+C Y G S+ A
Sbjct: 69 HSLEYINFLKSVTPETVTDPHPSVSENLKRFNVDVDWDGPVFHNLFDYCRAYAGGSISAA 128
Query: 613 MKLNNNTCDIAINWSGGLHHAKKFEPSGFCYVNDIVIAILELLKYHPRVLYIDIDVHH 786
KLN DIAINW+GG+HH KK + SGF YVND+V+AILELLK RVLYI+I H
Sbjct: 129 AKLNRQEADIAINWAGGMHHVKKDKASGFGYVNDVVLAILELLKSFKRVLYIEIGFPH 186
>At5g61060.1 68418.m07662 histone deacetylase family protein similar
to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo sapiens};
contains Pfam profile PF00850: Histone deacetylase
family
Length = 660
Score = 46.0 bits (104), Expect = 3e-05
Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Frame = +1
Query: 322 GPGHPMKPHRLAVTHCLVLKYGLHKKMQIYKPYRASAHDMCRFHSEDYIEFLQNVTPQNI 501
G HP P R+ V + G+ ++ + +A + H++D++ +++++ +
Sbjct: 43 GEDHPECPDRIRVIWEKLQLAGVSQRCVVLGSSKAEDKHLQLVHTKDHVNLVKSISTKQ- 101
Query: 502 QSYSKDLLHYNVGDDCPVFEGLFDFCSMYTGASLEGAMKLNNNT--CDIAINWSGGLHHA 675
+ Y ++ + + + + G + + G+ ++ A K+ C AI G HHA
Sbjct: 102 KDYRRNRIASQL-NSIYLNGGSSEAAYLAAGSVVKLAEKVAEGELDCGFAIVRPPG-HHA 159
Query: 676 KKFEPSGFCYVNDIVIAILELLKYHP-----RVLYIDIDVHH 786
+ E GFC N++ +A LL P ++L +D DVHH
Sbjct: 160 EADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHH 201
>At5g26040.2 68418.m03099 histone deacetylase family protein (HDA2)
identical to HDA2 [Arabidopsis thaliana] GI:21105771;
similar to SP|Q96DB2 Histone deacetylase 11 (HD11) {Homo
sapiens}; contains Pfam profile PF00850: Histone
deacetylase family
Length = 387
Score = 42.3 bits (95), Expect = 4e-04
Identities = 41/154 (26%), Positives = 59/154 (38%), Gaps = 3/154 (1%)
Frame = +1
Query: 331 HPMKPHRLAVTHCLVLKYGLHKKMQIYKPYRASAHDMCRFHSEDYIEFLQN-VTPQNIQS 507
HP + ++ G ++ I +P AS D+ HSE+Y+ L++ T I
Sbjct: 93 HPFDSSKWGRVCKFLVSDGFLEEKAIVEPLEASKIDLLVVHSENYLNSLKSSATVARITE 152
Query: 508 YSKDLLHYNVGDDCPVFEGLFDFCSMYTGASLEGAMKLNNNTCDIAINWSGGLHHAKKFE 687
+ N V L+ F G L + AIN GG HH
Sbjct: 153 VAPVAFFPNFLVQQKV---LYPFRKQVGGTILAAKLATERGW---AINIGGGFHHCTAER 206
Query: 688 PSGFCYVNDIVIAI-LELLKYH-PRVLYIDIDVH 783
GFC DI + I L+ RV+ ID+D H
Sbjct: 207 GGGFCAFADISLCIHFAFLRLRISRVMIIDLDAH 240
>At5g61070.1 68418.m07663 histone deacetylase family protein (HDA18)
identical to HDA18 [Arabidopsis thaliana] GI:21105769;
similar to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo
sapiens}; contains Pfam profile PF00850: Histone
deacetylase family
Length = 682
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +1
Query: 634 CDIAINWSGGLHHAKKFEPSGFCYVNDIVIAILELLKYHP-----RVLYIDIDVHH 786
C AI G HHA+ E GFC N++ +A LL P ++L +D D+HH
Sbjct: 180 CGFAIVRPPG-HHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIHH 234
>At4g33470.1 68417.m04754 histone deacetylase family protein similar
to histone deacetylase 10 isoform alpha [Homo sapiens]
GI:15213865; contains Pfam profile PF00850: Histone
deacetylase family
Length = 423
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 667 HHAKKFEPSGFCYVNDIVIAILELLKYH--PRVLYIDIDVHH 786
HHA P GFC ++ IA + H R+ ID DVHH
Sbjct: 201 HHAVPKGPMGFCVFGNVAIAARHAQRTHGLKRIFIIDFDVHH 242
>At1g08460.1 68414.m00936 histone deacetylase family protein (HDA8)
identical to HDA8 [Arabidopsis thaliana] GI:21360988low
similarity to SP|Q9Z2V5 Histone deacetylase 6 (HD6)
(Histone deacetylase mHDA2) {Mus musculus}; contains
Pfam profile PF00850: Histone deacetylase family;
supporting cDNA gi|21360987|gb|AF510167.1|
Length = 377
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 667 HHAKKFEPSGFCYVNDIVIAILELLKYH--PRVLYIDIDVHH 786
HH++ + G+C++N+ +A+ L RV IDIDVH+
Sbjct: 144 HHSQPTQADGYCFLNNAALAVKLALNSGSCSRVAVIDIDVHY 185
>At3g18520.2 68416.m02354 histone deacetylase family protein similar
to SP|P53973 Histone deacetylase HDA1 {Saccharomyces
cerevisiae}; contains Pfam profile PF00850: Histone
deacetylase family; AT-acceptor splice site at intron 7
Length = 556
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 667 HHAKKFEPSGFCYVND-IVIAILELLKYHPRVLYIDIDVHH 786
HHA GFC N+ V A++ +VL +D DVHH
Sbjct: 280 HHAGVRHAMGFCLHNNAAVAALVAQAAGAKKVLIVDWDVHH 320
>At3g18520.1 68416.m02353 histone deacetylase family protein similar
to SP|P53973 Histone deacetylase HDA1 {Saccharomyces
cerevisiae}; contains Pfam profile PF00850: Histone
deacetylase family; AT-acceptor splice site at intron 7
Length = 552
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 667 HHAKKFEPSGFCYVND-IVIAILELLKYHPRVLYIDIDVHH 786
HHA GFC N+ V A++ +VL +D DVHH
Sbjct: 276 HHAGVRHAMGFCLHNNAAVAALVAQAAGAKKVLIVDWDVHH 316
>At3g01550.1 68416.m00085 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower]{Brassica
oleracea}
Length = 383
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 610 AMKLNNNTCDIAINWSGGLHHAKKFEPSGFCYVNDIVIA 726
A +L T IAI W LH KF PS F + + +A
Sbjct: 112 AFQLGCGTLMIAIMWLLKLHPRPKFSPSQFTVIVQLAVA 150
>At5g14080.1 68418.m01647 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 634
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/58 (37%), Positives = 27/58 (46%)
Frame = -2
Query: 586 TLSRNRKDLRILDSRLQHYSAKDLLSNSVYFEELHFAETLCSPRCGNGTYRERWPYTA 413
TLS+ K+L D A +LLS+ YF EL + S C G RE YTA
Sbjct: 364 TLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLMISFLCKAGRVRE--SYTA 419
>At5g54090.1 68418.m06734 DNA mismatch repair MutS family protein
low similarity to SP|Q56239 DNA mismatch repair protein
mutS {Thermus aquaticus; contains Pfam profile PF00488:
MutS domain V
Length = 795
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 529 SAKDLLSNSVYFEELHFAETLCSPRCGNGTYRE 431
S LL +SVYF+ L + +C G GT E
Sbjct: 265 SVNGLLLSSVYFQVLSLEDNMCFSGSGGGTAAE 297
>At5g16100.1 68418.m01881 hypothetical protein
Length = 356
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 328 LDRS-GNYPRPDYRNTLPFVES*WINKYEFFQHKNNTQNDN 209
LD S NY D TL FVE + + F+ N+ NDN
Sbjct: 77 LDLSISNYDSKDEFETLSFVEDGFTIPLDMFEQPNDEHNDN 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,245,097
Number of Sequences: 28952
Number of extensions: 345850
Number of successful extensions: 782
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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