Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0823
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    29   0.92 
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    27   2.1  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   3.7  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   4.9  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   6.5  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    26   6.5  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   8.6  

>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 147 TVPFRVGSSGFAIGIVPRAKTRTYSALAQPPPEPFRRPK 31
           ++P + G +G+  G+ P +     SALA P   PFR P+
Sbjct: 403 SIPLQPGGTGYT-GVTP-SHAANGSALAAPQATPFRTPR 439


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 473 TVEFVMLTNPRNGKSSACNVVKIASKGKV 559
           T+EF+ +  P NG++S   +V+ A   KV
Sbjct: 102 TIEFMKINEPLNGQTSTTAIVQFAPPPKV 130


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
 Frame = +2

Query: 392 VDGEDTRRLFFHMSEVRGNPSELQSGDTVEFVMLTNPRNGKSSACNVVKIASKGKVXXXX 571
           V+ +D+R      S+   +  E QS   +E + LTNP    +++ +        K+    
Sbjct: 363 VESDDSRTSALSNSQNPSDDVENQSDQALEVLSLTNPPKIDNASADTTLHKETNKIDKLY 422

Query: 572 XXXXXXXXXTASLEESAGPRVIAVRTP---RGPDGSRGFRPRRPIAELLAE*DVLV 730
                     AS E S     +A++ P     P+ S   +P  P+ E  AE  V++
Sbjct: 423 VSENKAESAVAS-ESSLSEGTLALKAPAPENKPEKSSTSKP--PVPENKAEDSVVL 475


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = +2

Query: 68   SAEYVRVLA------RGTIPIAKPLEPTLNGTVTRTLRALNPDQAQYSGLI 202
            S EY  VLA       GT+ + +P   T+ GT+T   +      AQ SG +
Sbjct: 876  SVEYTTVLADASGSVTGTVEVVEPAAGTVTGTLTSGSQFFTTTIAQASGSV 926


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 209 PLESNRNIGLDQGSEPVRFSSQFHLEL 129
           P   N+N+G  Q +EP +++S F  EL
Sbjct: 98  PDSLNQNVGESQSNEPPKYTSTFMDEL 124


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
 Frame = -3

Query: 677 SLSIRRGRVECAQQSLEALPTPPTKPSGAEREAALD------VHFSLYPCSLF*RHCKQK 516
           +LS     V C +Q   AL   P  P   E + A+D      ++ S    +LF R+ +  
Sbjct: 76  ALSSSAEDVACVKQITHALLAAPFMPESKELKYAMDHNGLNPLYISFGTNALFERNARYS 135

Query: 515 TSH 507
           TSH
Sbjct: 136 TSH 138


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -2

Query: 693 GRRGRKPLDPSGPR--GVRTAITRG 625
           GRRGR+   P GPR  G+   I RG
Sbjct: 292 GRRGRREKTPLGPRLVGICMEIMRG 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,157,935
Number of Sequences: 5004
Number of extensions: 66114
Number of successful extensions: 226
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)