Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0823
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0043 - 3444713-3444811,3445077-3445137,3446042-3446090,344... 32 0.55
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 31 1.3
06_03_0256 - 18841627-18841993,18842087-18842415,18842512-188427... 29 3.9
09_06_0280 + 22010270-22011407,22011890-22013097 29 5.1
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 29 5.1
11_01_0597 + 4769748-4770166,4770263-4770545,4770725-4771360 28 6.8
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 28 6.8
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 28 6.8
06_01_0606 - 4382133-4382704,4383017-4383336,4384152-4384258,438... 28 9.0
04_04_0371 + 24771687-24772081,24772139-24772535,24773394-247734... 28 9.0
01_06_1078 + 34378985-34380064,34380155-34380283,34380362-343804... 28 9.0
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733... 28 9.0
>09_02_0043 -
3444713-3444811,3445077-3445137,3446042-3446090,
3446703-3447054,3448231-3448359,3449550-3449555
Length = 231
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = +2
Query: 374 VFGFLSVDGEDTRRLFFHMSEVRGNPSELQSGDTVEFVMLTNPRNGKSSACNVV 535
++G+++V + + L + ++ R NP ++ GD +E +T P+ G S C+V+
Sbjct: 15 LYGYIAVRDDLDKLLNYVVNYSRDNPIIMRQGDLIE---MTGPKRGISMCCSVL 65
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -2
Query: 216 PPST*IKPEYWA*SGFRARKVLVTVPFRVGSSGFAIGIVPRAKTRTYSALAQPPPEPFRR 37
PPS+ KP + R L T+P +G A +TRT ++ PPP P R
Sbjct: 36 PPSSSRKPPLPPRRSPQKRPGLPTIPENGPPAGMATATATPKRTRTPTSTCAPPPPPHAR 95
>06_03_0256 -
18841627-18841993,18842087-18842415,18842512-18842749,
18844091-18844373,18844773-18844989,18845067-18845360
Length = 575
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 501 GLVSITNSTVSPDCNSEGLPRTSDMWKNKRRVSSPSTDKKPKTPFMAS 358
G+V++TN+ +S D ++ M ++KR V+ P P +P AS
Sbjct: 158 GIVNLTNTVLSDDVSNPSTQSAETMGRSKREVAPP----PPPSPSQAS 201
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -1
Query: 469 PRLQLGGITSNLRHVEEQTTSIFAVDRQKAKNTFYGVNNGTSLLSNWHYVTGPS 308
PRL +G T + + +++ AVD A N Y V +GT+ W V S
Sbjct: 77 PRLMIGNSTLQVVSISLANSTLRAVDIAGAVNITYDVVSGTTGNGTWGGVAATS 130
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 658 AAWS-AHSNHSRPCRLLQRSRPEPREKPL 575
+AW A NH+ P +LQ + P+P KPL
Sbjct: 567 SAWFWASGNHADPAHILQLASPDPIFKPL 595
>11_01_0597 + 4769748-4770166,4770263-4770545,4770725-4771360
Length = 445
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 64 CKR*IRPCFGSRYYTYCEAARTN 132
C R PC G R YTY +A R N
Sbjct: 85 CYRSGDPCTGKRNYTYMDAVRAN 107
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = -2
Query: 135 RVGSSGFAIGIVPRAKTRTYSALAQPPPEP 46
R SS A G + RAKTR S L PPP+P
Sbjct: 264 RCTSSSTAAGHLMRAKTR--SRLMDPPPQP 291
>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 525 QAEDFPLRGLVSITNSTVSPDCNSEGLPRTSD 430
+AED L G+VS NST+S +S+ L SD
Sbjct: 1069 EAEDGSLEGVVSSENSTISSQNSSDYLFHMSD 1100
>06_01_0606 -
4382133-4382704,4383017-4383336,4384152-4384258,
4384339-4384512,4384956-4385204,4386831-4386986
Length = 525
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 631 SRPCRLLQRSRPEPREKPLWTFTSHFT 551
+RP + + P+PR+ LW TS FT
Sbjct: 195 ARPPLFFKETDPQPRKHTLWQATSDFT 221
>04_04_0371 +
24771687-24772081,24772139-24772535,24773394-24773435,
24773571-24774305,24775357-24775480,24775613-24776580,
24776917-24776925
Length = 889
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = -1
Query: 508 ITRISKHHELNSIPRLQLGGITSNLRHVEEQTTSIFAVDR 389
+ RI +HH ++ P ++ + +L+ ++ S+ VDR
Sbjct: 570 LKRICRHHGISRWPSRKINKVNRSLKKIQTVINSVHGVDR 609
>01_06_1078 +
34378985-34380064,34380155-34380283,34380362-34380430,
34380536-34380588,34381309-34381421,34381565-34382132,
34382520-34382580,34382624-34382665
Length = 704
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 604 FVGGVGRASSDCCAHSTRPRRIERLPSASSH 696
F G G+ S DCC H TR ++ S +SH
Sbjct: 646 FGGEEGKESKDCC-HITREKKNREFKSDTSH 675
>01_06_0061 -
26071984-26072343,26072792-26073139,26073228-26073371,
26073454-26073723,26075019-26075825
Length = 642
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 35 GRLNGSGGGCA-SAEYVRVLARGTIPIAKPLEPTLNGTVTRTLRALNP 175
G G GGG + A+ A G +P A+P G +TL+ + P
Sbjct: 77 GASGGGGGGVSCGAQPAAAAAAGAVPAAQPEGKKFLGVEVKTLKKIVP 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,097,833
Number of Sequences: 37544
Number of extensions: 487906
Number of successful extensions: 1925
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1923
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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