Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0823
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c...    31   0.80 
At4g10955.1 68417.m01782 lipase class 3 family protein contains ...    30   1.9  
At1g55540.1 68414.m06356 proline-rich family protein contains pr...    29   2.4  
At3g26580.1 68416.m03318 expressed protein                             29   3.2  
At2g31530.1 68415.m03852 secY family protein low similarity to S...    29   3.2  
At5g26080.1 68418.m03103 proline-rich family protein contains pr...    25   5.6  
At1g28110.2 68414.m03444 serine carboxypeptidase S10 family prot...    28   7.5  
At1g28110.1 68414.m03443 serine carboxypeptidase S10 family prot...    28   7.5  
At5g05050.1 68418.m00536 peptidase C1A papain family protein wea...    27   9.9  
At3g19090.1 68416.m02426 RNA-binding protein, putative similar t...    27   9.9  

>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 299

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 359 DAIKGVFGFLSVDGEDTRRLFFHMSEVRGNP-SELQSGDTVEFVMLTNPRNGKSSACNV 532
           +A KG +GF++ D + +  LF H S +       L  GD VEF  +T   +GK+ A NV
Sbjct: 19  NASKG-YGFITPD-DGSVELFVHQSSIVSEGYRSLTVGDAVEFA-ITQGSDGKTKAVNV 74


>At4g10955.1 68417.m01782 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 350

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 619 RLLQRSRPEPREKPLWTFTSHFTLARYFNDIASRRL 512
           R LQR  PE    P+W+   HF L R F D A   +
Sbjct: 46  RQLQREGPELALSPIWSEFFHFRLIRKFVDDADNSI 81


>At1g55540.1 68414.m06356 proline-rich family protein contains
           proline rich extensin domain, INTERPRO:IPR002965
          Length = 915

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 599 TASLEESAGPRVIAVRTPRGPDGSRGFRPRRPIAELLAE 715
           T+  EESA  ++   RT   P GS  F P+RP+A  + E
Sbjct: 218 TSYAEESAPSQIKDTRTVSQPGGS-SFLPKRPVASTVLE 255


>At3g26580.1 68416.m03318 expressed protein 
          Length = 350

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 726 KTSHSANNSAMGRRGRKPLDPSGPRGVRTAITRGPADSSNEAV 598
           + SHS  +        KPL+  G   VR  +TRG A+S   AV
Sbjct: 40  RDSHSHVSHYAALSSNKPLESDGEARVRRFLTRGKANSRANAV 82


>At2g31530.1 68415.m03852 secY family protein low similarity to
           SP|P31159 Preprotein translocase secY subunit
           {Synechococcus sp}; contains Pfam profile PF00344:
           eubacterial secY protein
          Length = 556

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 411 RVSSPSTDKKPKTPFMASTMARRFFLIGTMLLARPSMSA*KVTGSP 274
           R  SP T+ +P  PF  +    +  L  T LLA PS+ A  + GSP
Sbjct: 368 REGSPITEVEPYIPFNINPAGMQPVLTTTYLLAFPSILA-SILGSP 412


>At5g26080.1 68418.m03103 proline-rich family protein contains
          proline-rich extensin domains, INTERPRO:IPR002965
          Length = 141

 Score = 24.6 bits (51), Expect(2) = 5.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 87 TRTYSALAQPPPEPFRRP 34
          T  Y  +  PPP P+R P
Sbjct: 33 TTNYQPIYSPPPPPYRSP 50



 Score = 22.2 bits (45), Expect(2) = 5.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 60  PPPEPFRRPKLYSTSMP 10
           PPP P   P +YS   P
Sbjct: 75  PPPPPIYPPPIYSPPPP 91


>At1g28110.2 68414.m03444 serine carboxypeptidase S10 family protein
           similar to H.vulgare gene encoding serine
           carboxypeptidase II, CP-MII GI:1731989
          Length = 461

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 380 GFLSVDGEDTRRLFFHMSEVRGNPS 454
           G+++VD +  R LF++ +E   NPS
Sbjct: 48  GYVTVDDKKQRALFYYFAEAETNPS 72


>At1g28110.1 68414.m03443 serine carboxypeptidase S10 family protein
           similar to H.vulgare gene encoding serine
           carboxypeptidase II, CP-MII GI:1731989
          Length = 461

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 380 GFLSVDGEDTRRLFFHMSEVRGNPS 454
           G+++VD +  R LF++ +E   NPS
Sbjct: 48  GYVTVDDKKQRALFYYFAEAETNPS 72


>At5g05050.1 68418.m00536 peptidase C1A papain family protein weak
           similarity to berghepain-2 [Plasmodium berghei]
           GI:17978639; contains Pfam profile PF00112: Papain
           family cysteine protease
          Length = 299

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 423 KNKRRVSSPSTDKKPKTPFMAST 355
           KNK+  SS S+ KK K+P  AST
Sbjct: 55  KNKKSSSSSSSSKKNKSPAKAST 77


>At3g19090.1 68416.m02426 RNA-binding protein, putative similar to
           RNA-binding protein homolog GB:AAF00075 GI:6449448 from
           [Brassica napus]; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 455

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 614 ESAGPRVIAVRTPRGPDGSRGF 679
           ES+ P+  A + PR PDG+RGF
Sbjct: 419 ESSSPKT-ATKGPRMPDGTRGF 439


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,046,120
Number of Sequences: 28952
Number of extensions: 366566
Number of successful extensions: 1265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)