Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0822
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 29 1.1
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 28 1.9
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 27 2.5
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 4.3
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 5.7
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 26 5.7
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 7.5
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 26 7.5
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 25 10.0
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 10.0
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 147 TVPFRVGSSGFAIGIVPRAKTRTYSALAQPPPEPFRRPK 31
++P + G +G+ G+ P + SALA P PFR P+
Sbjct: 403 SIPLQPGGTGYT-GVTP-SHAANGSALAAPQATPFRTPR 439
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 823 MKQFKSKIKPIAVFFNYVHSCKMFRSCCGLVDQDVS 716
+ F S+ +PI F+Y S SC GL+D + S
Sbjct: 517 LSPFPSRTRPILWDFDYALSVFPLPSCMGLIDSESS 552
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 473 TVEFVMLTNPRNGKSSACNVVKIASKGKV 559
T+EF+ + P NG++S +V+ A KV
Sbjct: 102 TIEFMKINEPLNGQTSTTAIVQFAPPPKV 130
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.6 bits (56), Expect = 4.3
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Frame = +2
Query: 392 VDGEDTRRLFFHMSEVRGNPSELQSGDTVEFVMLTNPRNGKSSACNVVKIASKGKVXXXX 571
V+ +D+R S+ + E QS +E + LTNP +++ + K+
Sbjct: 363 VESDDSRTSALSNSQNPSDDVENQSDQALEVLSLTNPPKIDNASADTTLHKETNKIDKLY 422
Query: 572 XXXXXXXXXTASLEESAGPRVIAVRTP---RGPDGSRGFRPRRPIAELLAE*DVLV 730
AS E S +A++ P P+ S +P P+ E AE V++
Sbjct: 423 VSENKAESAVAS-ESSLSEGTLALKAPAPENKPEKSSTSKP--PVPENKAEDSVVL 475
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 26.2 bits (55), Expect = 5.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = +2
Query: 68 SAEYVRVLA------RGTIPIAKPLEPTLNGTVTRTLRALNPDQAQYSGLI 202
S EY VLA GT+ + +P T+ GT+T + AQ SG +
Sbjct: 876 SVEYTTVLADASGSVTGTVEVVEPAAGTVTGTLTSGSQFFTTTIAQASGSV 926
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 636 LLCALHAAPTDREASVRVVPSQNCWPSETSWSTNPQ 743
LLCA T ++ R+VP C P++ PQ
Sbjct: 651 LLCASEDLDTFQKIPYRLVPGNKCTPNKRDSHREPQ 686
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 209 PLESNRNIGLDQGSEPVRFSSQFHLEL 129
P N+N+G Q +EP +++S F EL
Sbjct: 98 PDSLNQNVGESQSNEPPKYTSTFMDEL 124
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = -1
Query: 677 SLSIRRGRVECAQQSLEALPTPPTKPSGAEREAALD------VHFSLYPCSLF*RHCKQK 516
+LS V C +Q AL P P E + A+D ++ S +LF R+ +
Sbjct: 76 ALSSSAEDVACVKQITHALLAAPFMPESKELKYAMDHNGLNPLYISFGTNALFERNARYS 135
Query: 515 TSH 507
TSH
Sbjct: 136 TSH 138
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 702 NCWPSETSWSTNPQQDLNILQ 764
NCWP TS T+ +DL +Q
Sbjct: 175 NCWPYYTSSPTSDAEDLVYIQ 195
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -3
Query: 693 GRRGRKPLDPSGPR--GVRTAITRG 625
GRRGR+ P GPR G+ I RG
Sbjct: 292 GRRGRREKTPLGPRLVGICMEIMRG 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,491,152
Number of Sequences: 5004
Number of extensions: 73552
Number of successful extensions: 246
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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