Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0822
(830 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 5e-10
SB_33359| Best HMM Match : DGPF (HMM E-Value=2.7) 33 0.28
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_24802| Best HMM Match : Phage_fiber_C (HMM E-Value=1.1) 29 6.1
SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 28 8.1
SB_58853| Best HMM Match : SNF (HMM E-Value=0) 28 8.1
>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 52.8 bits (121), Expect(2) = 5e-10
Identities = 29/55 (52%), Positives = 36/55 (65%)
Frame = +2
Query: 377 FGFLSVDGEDTRRLFFHMSEVRGNPSELQSGDTVEFVMLTNPRNGKSSACNVVKI 541
FGF+ + E+ + LFFH+SEV N ELQ+GD VEF + R GK SA NV KI
Sbjct: 718 FGFIGHENEEGKNLFFHISEVAEN-VELQAGDEVEF-FVVQKRGGKLSAVNVRKI 770
Score = 43.2 bits (97), Expect = 3e-04
Identities = 24/73 (32%), Positives = 38/73 (52%)
Frame = +2
Query: 341 KRRAIVDAIKGVFGFLSVDGEDTRRLFFHMSEVRGNPSELQSGDTVEFVMLTNPRNGKSS 520
+ +V A+K FGF+ D R +FFH SE+ + ++Q GD VEF + + + K
Sbjct: 363 REMGVVAALKDGFGFIRCCDRDAR-MFFHFSELVESSRQIQIGDEVEFSITEDANSMKRV 421
Query: 521 ACNVVKIASKGKV 559
V+I KG +
Sbjct: 422 NAIKVRILPKGTI 434
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Frame = +2
Query: 221 SYEFGIMGLSCKREILQVGDPVTFQADIE-----GRASNIVPIRKKRRAIVDAIKGVFGF 385
S E+GI L K+ +LQ GD V FQ ++ RA + P R++ RA V+++KG
Sbjct: 588 SVEYGITSLIDKKTVLQCGDRVRFQIGVDRETGCKRAMKVTPERQRVRARVESVKGQLS- 646
Query: 386 LSVD 397
LSV+
Sbjct: 647 LSVE 650
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Frame = +2
Query: 275 GDPVTFQADIE-----GRASNIVPIR----KKRRAIVDAIKGVFGFLSVDGEDTRRLFFH 427
GD V F I+ RA +++ + +K + +V ++K FGF+ + +FFH
Sbjct: 172 GDKVQFVVSIDKRTGVSRAKDVMLLETAKAEKYQGVVSSMKESFGFIE-RADKVSEIFFH 230
Query: 428 MSEVRGNPSELQSGDTVEFVMLTNPRN 508
SE + +EL GD VEF++ PRN
Sbjct: 231 YSEFLDDINELTLGDDVEFII--QPRN 255
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +2
Query: 377 FGFLSVDGEDTRRLFFHMSEVRGNPSELQSGDTVEFVMLTNPRNGKSSACNVV 535
+GF+ E R+FFH S+ +G+ +L+ GD VEF + + R+ K A N+V
Sbjct: 66 YGFIQCC-ERELRIFFHYSQYKGDLDDLRIGDEVEFGVSCDQRSKKPVAVNIV 117
Score = 29.1 bits (62), Expect(2) = 5e-10
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 629 RVIAVRTPRGPDGSRGFRPRRPIAE 703
RV+ +R P PDG+RGF +R + +
Sbjct: 771 RVMVIRKPIAPDGTRGFTYQRSLRD 795
>SB_33359| Best HMM Match : DGPF (HMM E-Value=2.7)
Length = 305
Score = 33.1 bits (72), Expect = 0.28
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = -2
Query: 667 SVGAAWSAHSNHSRPCRLLQRSRPEPREKPLWTFTSHFTLARYFNDIASRRLPITRISKH 488
+ AA AH+N PC L R R ++ L+T++ T + YF D +R+ + H
Sbjct: 43 TTNAAVDAHNNRCIPCHRLIRQRXW-KQNLLYTWSLDATFSLYFADAGTRK---KKTKSH 98
Query: 487 HELNSIPRLQLGGITSNLRH 428
+ S +++ S+L+H
Sbjct: 99 PSVASPTTVKVSQKPSDLQH 118
>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1925
Score = 32.3 bits (70), Expect = 0.50
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 29 SLGRLNGSGGGCASA---EYVRVLARGTIPIAKPLE 127
SL RL GS GGC + EY+R +A P+A P+E
Sbjct: 1109 SLLRLTGSKGGCINTDAEEYIRHVAEMAAPVAIPIE 1144
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = -3
Query: 498 LVSITNSTVSPDCNSEGLPRTSDMWKNKRRVSSPSTDKKPKTPFMAST 355
LV I ST S C + P T R S+PST P TP ST
Sbjct: 369 LVDIITSTPSTPC-TPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPST 415
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -3
Query: 486 TNSTVSPDC--NSEGLPRTSDMWKNKRRVSSPSTDKKPKTPFMAST 355
T ST S C N+ P T M S+PST P TP ST
Sbjct: 266 TPSTPSTPCTPNTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAPST 311
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -3
Query: 486 TNSTVSPDC--NSEGLPRTSDMWKNKRRVSSPSTDKKPKTPFMAST 355
T ST S C N+ P T M S+PST P TP ST
Sbjct: 816 TPSTPSTPCTPNTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAPST 861
>SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 933
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 519 EDFPLRGLVSITNSTVSPDCNSEGLPRTSDMWKNKRRVSSPSTDK 385
E FP+ L + NST+ +C ++G P W +K S P + +
Sbjct: 839 ETFPMSSLTAAYNSTIRLECFTDGRPAPKVTW-SKVGDSQPDSSR 882
>SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1529
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +2
Query: 29 SLGRLNGSGGGCASA---EYVRVLARGTIPIAKPLE 127
SL RL G+ G C + EY+R +A P+A P+E
Sbjct: 1244 SLSRLTGAKGVCINTDADEYIRHVAEMAAPVAIPIE 1279
>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1933
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 697 DGTTRTEASRSVGAAWSAHSNHSRPCRLLQRSRPEPREKPLWTFTSHFTLA 545
D ++ S + +A +A NHSRP R+RP+ ++K +H T A
Sbjct: 1276 DSPGQSAESTASTSADNADGNHSRPSNRRHRNRPQRKKKGKKAAMNHATEA 1326
>SB_24802| Best HMM Match : Phage_fiber_C (HMM E-Value=1.1)
Length = 1072
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Frame = +2
Query: 608 LEESAGPRVIAVRTPRGP--DGSRGFRPRRPIAELLAE*DVLVDQPATRPEHFTAMYVVK 781
LE + + VR GP G RP + + D D+P R + + V+
Sbjct: 425 LERATKETSVLVRQRMGPLTSAETGLRPHQDLVSTCLFLDPEFDEPCARHQSLDLLSVLA 484
Query: 782 KNSYRFDFRFKLFHC 826
+NS + D R + C
Sbjct: 485 ENSAQDDVRMLVKMC 499
>SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 600
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 495 VSITNSTVSPDCNSEGLPRTS 433
VSI + T+SP C+ EGL R S
Sbjct: 265 VSINSDTLSPVCSDEGLSRVS 285
>SB_58853| Best HMM Match : SNF (HMM E-Value=0)
Length = 905
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 635 SLEALPTPPTKPSGAEREAALDVHFSLYPCSLF*RHCKQKTSHY 504
SL +P PP++ AERE+ + + + L P + R SH+
Sbjct: 555 SLSRIPLPPSEIPLAERESWVSLFYFLKPQKIMVRGLSAVVSHF 598
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,922,525
Number of Sequences: 59808
Number of extensions: 593278
Number of successful extensions: 1981
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1942
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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