Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0822
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    24   2.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   4.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.0  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 444 PRTSDMWKNKRRVSSPSTDKKPKTPFMASTMAR 346
           PRT  + ++    +    +K+P+T F A  +AR
Sbjct: 2   PRTRRVKRSHNGKNGSPEEKRPRTAFSAEQLAR 34


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 191 SGLIQVEGGTSYEFGIMGLSCKREILQVG 277
           SG+ ++  G+S EF    +SC RE+  +G
Sbjct: 385 SGVYRI--GSSVEFDWCAVSCLRELRNLG 411


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 463 LQLGGITSNLRHVEEQTTSIFAVDRQKAKNTFYGVNN 353
           + L  +T+NL +    + S++ V+ +    + YG NN
Sbjct: 257 MALSPMTNNLYYSPLSSRSLYYVNTKPFMKSEYGANN 293


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 483 NSTVSPDCNSEGLPRTSDMWK 421
           N  V+  C ++G+P  + +WK
Sbjct: 724 NKHVALHCQAQGVPTPTIVWK 744


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 483 NSTVSPDCNSEGLPRTSDMWK 421
           N  V+  C ++G+P  + +WK
Sbjct: 720 NKHVALHCQAQGVPTPTIVWK 740


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,505
Number of Sequences: 438
Number of extensions: 5271
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)