Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0822
         (830 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c...    31   0.94 
At4g10955.1 68417.m01782 lipase class 3 family protein contains ...    30   2.2  
At3g17530.1 68416.m02239 F-box family protein contains Pfam prof...    30   2.2  
At3g26580.1 68416.m03318 expressed protein                             29   2.9  
At1g55540.1 68414.m06356 proline-rich family protein contains pr...    29   2.9  
At2g31530.1 68415.m03852 secY family protein low similarity to S...    29   3.8  
At5g26080.1 68418.m03103 proline-rich family protein contains pr...    25   6.5  
At1g28110.2 68414.m03444 serine carboxypeptidase S10 family prot...    28   8.7  
At1g28110.1 68414.m03443 serine carboxypeptidase S10 family prot...    28   8.7  

>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 299

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 359 DAIKGVFGFLSVDGEDTRRLFFHMSEVRGNP-SELQSGDTVEFVMLTNPRNGKSSACNV 532
           +A KG +GF++ D + +  LF H S +       L  GD VEF  +T   +GK+ A NV
Sbjct: 19  NASKG-YGFITPD-DGSVELFVHQSSIVSEGYRSLTVGDAVEFA-ITQGSDGKTKAVNV 74


>At4g10955.1 68417.m01782 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 350

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 619 RLLQRSRPEPREKPLWTFTSHFTLARYFNDIASRRL 512
           R LQR  PE    P+W+   HF L R F D A   +
Sbjct: 46  RQLQREGPELALSPIWSEFFHFRLIRKFVDDADNSI 81


>At3g17530.1 68416.m02239 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 388

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -2

Query: 769 HSCKMFRSCCGLVDQDVSL 713
           HS K+ RSCC  VDQ++SL
Sbjct: 155 HSYKILRSCCYYVDQNLSL 173


>At3g26580.1 68416.m03318 expressed protein 
          Length = 350

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 747 LVAGWSTKTSHSANNSAMGRRGRKPLDPSGPRGVRTAITRGPADSSNEAV 598
           +V     + SHS  +        KPL+  G   VR  +TRG A+S   AV
Sbjct: 33  VVLNLQKRDSHSHVSHYAALSSNKPLESDGEARVRRFLTRGKANSRANAV 82


>At1g55540.1 68414.m06356 proline-rich family protein contains
           proline rich extensin domain, INTERPRO:IPR002965
          Length = 915

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 599 TASLEESAGPRVIAVRTPRGPDGSRGFRPRRPIAELLAE 715
           T+  EESA  ++   RT   P GS  F P+RP+A  + E
Sbjct: 218 TSYAEESAPSQIKDTRTVSQPGGS-SFLPKRPVASTVLE 255


>At2g31530.1 68415.m03852 secY family protein low similarity to
           SP|P31159 Preprotein translocase secY subunit
           {Synechococcus sp}; contains Pfam profile PF00344:
           eubacterial secY protein
          Length = 556

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 411 RVSSPSTDKKPKTPFMASTMARRFFLIGTMLLARPSMSA*KVTGSP 274
           R  SP T+ +P  PF  +    +  L  T LLA PS+ A  + GSP
Sbjct: 368 REGSPITEVEPYIPFNINPAGMQPVLTTTYLLAFPSILA-SILGSP 412


>At5g26080.1 68418.m03103 proline-rich family protein contains
          proline-rich extensin domains, INTERPRO:IPR002965
          Length = 141

 Score = 24.6 bits (51), Expect(2) = 6.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 87 TRTYSALAQPPPEPFRRP 34
          T  Y  +  PPP P+R P
Sbjct: 33 TTNYQPIYSPPPPPYRSP 50



 Score = 22.2 bits (45), Expect(2) = 6.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 60  PPPEPFRRPKLYSTSMP 10
           PPP P   P +YS   P
Sbjct: 75  PPPPPIYPPPIYSPPPP 91


>At1g28110.2 68414.m03444 serine carboxypeptidase S10 family protein
           similar to H.vulgare gene encoding serine
           carboxypeptidase II, CP-MII GI:1731989
          Length = 461

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 380 GFLSVDGEDTRRLFFHMSEVRGNPS 454
           G+++VD +  R LF++ +E   NPS
Sbjct: 48  GYVTVDDKKQRALFYYFAEAETNPS 72


>At1g28110.1 68414.m03443 serine carboxypeptidase S10 family protein
           similar to H.vulgare gene encoding serine
           carboxypeptidase II, CP-MII GI:1731989
          Length = 461

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 380 GFLSVDGEDTRRLFFHMSEVRGNPS 454
           G+++VD +  R LF++ +E   NPS
Sbjct: 48  GYVTVDDKKQRALFYYFAEAETNPS 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,706,127
Number of Sequences: 28952
Number of extensions: 404855
Number of successful extensions: 1356
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)