Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0821
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    27   0.21 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.0  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 279 HGLCILDGTELSGPDSCSIVQCCSTAESRSGSNYSR 172
           +G C+++    +   +C + +C     S+SGS Y R
Sbjct: 45  NGECVINKKNRTACKACRLRKCLLVGMSKSGSRYGR 80


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = -2

Query: 276 GLCILDGTELSGPDSCSIVQCCSTAESRSGSNYSR 172
           G CI+D T  +   +C + +C +   ++    + R
Sbjct: 80  GSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQHER 114


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = -2

Query: 276 GLCILDGTELSGPDSCSIVQCCSTAESRSGSNYSR 172
           G CI+D T  +   +C + +C +   ++    + R
Sbjct: 80  GSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQHER 114


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,464
Number of Sequences: 336
Number of extensions: 1676
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)