Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0821
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    27   2.9  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  

>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 157 WRPARQCTLLPLLSFQDRPVNVLYSLI 77
           W+P   CTL   LSFQ    N+ + ++
Sbjct: 584 WKPENSCTLPDHLSFQRIQENIYFGIV 610


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 210 STAESRSGSNYSRSCDSNGGRPANV 136
           S AE+ SGSN+SR+  S   +  +V
Sbjct: 264 SVAETGSGSNFSRATSSRSSKTRSV 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,964
Number of Sequences: 5004
Number of extensions: 26082
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)