Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0821
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)                28   9.3  
SB_36082| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
          Length = 1008

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/63 (28%), Positives = 23/63 (36%)
 Frame = +2

Query: 224 MLQLSGPLSSVPSRMHRPCKXXXXXXXXXXXXRGPASPKLPLGPDKLKRSRMPELWMQLA 403
           ML    PL    +R  RP              +GP  P +  G D  +R   P+ W Q  
Sbjct: 265 MLPPGAPLRPYQARPLRPDMAQTWATPMGQSTQGPNVPGIRPGMDGAQRGTTPQGWQQAP 324

Query: 404 SLT 412
           S T
Sbjct: 325 STT 327


>SB_36082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +3

Query: 69  CRTIRLYRTFTG--RSWKLRSGRSVHWR 146
           C   R   TF G  R WK  +G SV WR
Sbjct: 251 CHLKRRQETFNGDTRHWKRATGESVQWR 278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,191,937
Number of Sequences: 59808
Number of extensions: 238420
Number of successful extensions: 881
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)