Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0821
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to ...    29   2.5  
At2g33845.1 68415.m04154 DNA-binding protein-related contains we...    29   4.4  
At1g76500.1 68414.m08901 DNA-binding family protein contains Pfa...    28   5.8  
At1g03910.1 68414.m00376 expressed protein low similarity to cac...    28   7.6  

>At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to CXC
           domain protein TSO1 [Arabidopsis thaliana] GI:7767425
          Length = 695

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 736 PASSDQSSPHPPKQHLPKHRRF*RRHQLQP 647
           P+S   S+P PP +HL  H+ F  +++L P
Sbjct: 566 PSSDQPSTPLPPYRHLVVHQPFLSKNRLPP 595


>At2g33845.1 68415.m04154 DNA-binding protein-related contains weak
           similarity to G-quartet DNA binding protein 3
           [Tetrahymena thermophila] gi|4583503|gb|AAD25098
          Length = 182

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -1

Query: 736 PASSDQSSPHPPKQHLPKHRR---F*RRHQLQPGPELH 632
           P+SS ++S + P QH P+ ++   F +  QL+PG   H
Sbjct: 33  PSSSTRTSQNQPPQHTPQEKKKPVFVKVDQLKPGTSGH 70


>At1g76500.1 68414.m08901 DNA-binding family protein contains Pfam
           domain, PF02178: AT hook motif
          Length = 302

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 661 HQLQPGPELH**PRRQPE 608
           HQLQP P+LH  P+ QP+
Sbjct: 25  HQLQPQPQLHPLPQPQPQ 42


>At1g03910.1 68414.m00376 expressed protein low similarity to cactin
           [Drosophila melanogaster] GI:7673675; expression
           supported by MPSS
          Length = 672

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 261 DGTE-LSGPDSCSIVQCCSTAESRSGSNYSRSCDSNGGRPANVRSS 127
           DG++ LS P S    +  S+  +R  S+   S DS+GGR +  RSS
Sbjct: 36  DGSDDLSPPRSSRRKKGSSSRRTRRRSSSDDSSDSDGGRKSKKRSS 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,830,095
Number of Sequences: 28952
Number of extensions: 159262
Number of successful extensions: 473
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)