SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0817
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68317-1|CAA92686.1|  214|Caenorhabditis elegans Hypothetical pr...   196   1e-50
AB000919-1|BAA22597.1|  214|Caenorhabditis elegans VHA-4 protein.     196   1e-50
Z29095-6|CAA82354.1|  169|Caenorhabditis elegans Hypothetical pr...    67   1e-11
AB000917-1|BAA22595.1|  169|Caenorhabditis elegans VHA-1 protein.      67   1e-11
Z29095-3|CAA82355.1|  161|Caenorhabditis elegans Hypothetical pr...    64   7e-11
AC024762-4|AAF59473.1|  161|Caenorhabditis elegans Vacuolar h at...    64   7e-11
AB009566-1|BAA75066.1|  161|Caenorhabditis elegans Vha3 protein ...    64   7e-11
AB000918-1|BAA22596.1|  161|Caenorhabditis elegans VHA-2 protein.      64   7e-11
AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine r...    31   0.85 
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass...    29   3.4  
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass...    29   3.4  
Z69718-2|CAA93536.1|  139|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin reu...    28   6.0  
AF036705-2|AAM98021.1|  237|Caenorhabditis elegans Hypothetical ...    28   6.0  
AF036705-1|AAB95170.1|  249|Caenorhabditis elegans Hypothetical ...    28   6.0  
AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of...    28   6.0  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z48716-1|CAA88601.1|  482|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine r...    28   7.9  

>Z68317-1|CAA92686.1|  214|Caenorhabditis elegans Hypothetical
           protein T01H3.1 protein.
          Length = 214

 Score =  196 bits (479), Expect = 1e-50
 Identities = 97/188 (51%), Positives = 127/188 (67%), Gaps = 5/188 (2%)
 Frame = +2

Query: 185 LYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKA 364
           L+Y+L+G+G +  +GWFL +TSP+MW  LGI FS++LSV+GA  GI TTG SI+GGGVKA
Sbjct: 26  LFYMLSGQGHRFDIGWFLTSTSPHMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKA 85

Query: 365 PRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYSE---PFT--SVSVKQQNWMAGYVM 529
           PRI+TKNL+S+IFCEAVAI+G+I A V  G L ++     P T   +++  +N  +GY++
Sbjct: 86  PRIRTKNLVSIIFCEAVAIFGIIMAFVFVGKLAEFRREDLPDTEDGMAILARNLASGYMI 145

Query: 530 FGAGLAVGLVNLFCXXXXXXXXXXXXXXXXXXXXXFVKILIVEIFGSAIGLFGLIVGIYM 709
           FG GL VGL NL C                     FVKILI+EIF SAIGLFG+I+GI  
Sbjct: 146 FGGGLTVGLSNLVCGLAVGIVGSGAAIADAANPALFVKILIIEIFASAIGLFGMIIGIVQ 205

Query: 710 TSKVKMGN 733
           T+K   GN
Sbjct: 206 TNKASFGN 213


>AB000919-1|BAA22597.1|  214|Caenorhabditis elegans VHA-4 protein.
          Length = 214

 Score =  196 bits (479), Expect = 1e-50
 Identities = 97/188 (51%), Positives = 127/188 (67%), Gaps = 5/188 (2%)
 Frame = +2

Query: 185 LYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKA 364
           L+Y+L+G+G +  +GWFL +TSP+MW  LGI FS++LSV+GA  GI TTG SI+GGGVKA
Sbjct: 26  LFYMLSGQGHRFDIGWFLTSTSPHMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKA 85

Query: 365 PRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYSE---PFT--SVSVKQQNWMAGYVM 529
           PRI+TKNL+S+IFCEAVAI+G+I A V  G L ++     P T   +++  +N  +GY++
Sbjct: 86  PRIRTKNLVSIIFCEAVAIFGIIMAFVFVGKLAEFRREDLPDTEDGMAILARNLASGYMI 145

Query: 530 FGAGLAVGLVNLFCXXXXXXXXXXXXXXXXXXXXXFVKILIVEIFGSAIGLFGLIVGIYM 709
           FG GL VGL NL C                     FVKILI+EIF SAIGLFG+I+GI  
Sbjct: 146 FGGGLTVGLSNLVCGLAVGIVGSGAAIADAANPALFVKILIIEIFASAIGLFGMIIGIVQ 205

Query: 710 TSKVKMGN 733
           T+K   GN
Sbjct: 206 TNKASFGN 213


>Z29095-6|CAA82354.1|  169|Caenorhabditis elegans Hypothetical
           protein R10E11.8 protein.
          Length = 169

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 41/150 (27%), Positives = 67/150 (44%)
 Frame = +2

Query: 260 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 439
           +G+LG+  ++A +  G+A G    G  I    V  P +  K +I V+    VAIYGL+ A
Sbjct: 25  FGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVA 84

Query: 440 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 619
           +++SG +E     +T  +   Q        F  GL  GL  L                  
Sbjct: 85  VIVSGKVEPAGANYTINNAFSQ--------FAGGLVCGLCGLGAGYAIGIAGDAGVRALS 136

Query: 620 XXXXXFVKILIVEIFGSAIGLFGLIVGIYM 709
                FV ++++ IF   +GL+G+IV + +
Sbjct: 137 QQPRMFVGMILILIFAEVLGLYGMIVALIL 166


>AB000917-1|BAA22595.1|  169|Caenorhabditis elegans VHA-1 protein.
          Length = 169

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 41/150 (27%), Positives = 67/150 (44%)
 Frame = +2

Query: 260 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 439
           +G+LG+  ++A +  G+A G    G  I    V  P +  K +I V+    VAIYGL+ A
Sbjct: 25  FGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVA 84

Query: 440 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 619
           +++SG +E     +T  +   Q        F  GL  GL  L                  
Sbjct: 85  VIVSGKVEPAGANYTINNAFSQ--------FAGGLVCGLCGLGAGYAIGIAGDAGVRALS 136

Query: 620 XXXXXFVKILIVEIFGSAIGLFGLIVGIYM 709
                FV ++++ IF   +GL+G+IV + +
Sbjct: 137 QQPRMFVGMILILIFAEVLGLYGMIVALIL 166


>Z29095-3|CAA82355.1|  161|Caenorhabditis elegans Hypothetical
           protein R10E11.2 protein.
          Length = 161

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 44/150 (29%), Positives = 68/150 (45%)
 Frame = +2

Query: 260 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 439
           +G +G A +   +V+GAA G   + V I   GV  P +  K++I VI    + IYGL+ A
Sbjct: 17  FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76

Query: 440 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 619
           +VL G +       TS S    +   G+    AGL  GL  L                  
Sbjct: 77  MVLKGKV-------TSASA-GYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128

Query: 620 XXXXXFVKILIVEIFGSAIGLFGLIVGIYM 709
                FV ++++ IF   +GL+G+IV + +
Sbjct: 129 QQPRLFVGMILILIFSEVLGLYGMIVALIL 158


>AC024762-4|AAF59473.1|  161|Caenorhabditis elegans Vacuolar h
           atpase protein 3 protein.
          Length = 161

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 44/150 (29%), Positives = 68/150 (45%)
 Frame = +2

Query: 260 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 439
           +G +G A +   +V+GAA G   + V I   GV  P +  K++I VI    + IYGL+ A
Sbjct: 17  FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76

Query: 440 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 619
           +VL G +       TS S    +   G+    AGL  GL  L                  
Sbjct: 77  MVLKGKV-------TSASA-GYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128

Query: 620 XXXXXFVKILIVEIFGSAIGLFGLIVGIYM 709
                FV ++++ IF   +GL+G+IV + +
Sbjct: 129 QQPRLFVGMILILIFSEVLGLYGMIVALIL 158


>AB009566-1|BAA75066.1|  161|Caenorhabditis elegans Vha3 protein
           protein.
          Length = 161

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 44/150 (29%), Positives = 68/150 (45%)
 Frame = +2

Query: 260 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 439
           +G +G A +   +V+GAA G   + V I   GV  P +  K++I VI    + IYGL+ A
Sbjct: 17  FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76

Query: 440 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 619
           +VL G +       TS S    +   G+    AGL  GL  L                  
Sbjct: 77  MVLKGKV-------TSASA-GYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128

Query: 620 XXXXXFVKILIVEIFGSAIGLFGLIVGIYM 709
                FV ++++ IF   +GL+G+IV + +
Sbjct: 129 QQPRLFVGMILILIFSEVLGLYGMIVALIL 158


>AB000918-1|BAA22596.1|  161|Caenorhabditis elegans VHA-2 protein.
          Length = 161

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 44/150 (29%), Positives = 68/150 (45%)
 Frame = +2

Query: 260 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 439
           +G +G A +   +V+GAA G   + V I   GV  P +  K++I VI    + IYGL+ A
Sbjct: 17  FGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVA 76

Query: 440 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 619
           +VL G +       TS S    +   G+    AGL  GL  L                  
Sbjct: 77  MVLKGKV-------TSASA-GYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128

Query: 620 XXXXXFVKILIVEIFGSAIGLFGLIVGIYM 709
                FV ++++ IF   +GL+G+IV + +
Sbjct: 129 QQPRLFVGMILILIFSEVLGLYGMIVALIL 158


>AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine
           receptor, class t protein8 protein.
          Length = 350

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
 Frame = +2

Query: 128 YFLSYLFVLLVGLAIPIFSLYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVA----- 292
           YFL +L VL + L IP++ L  VL+   + +SL   + + +  ++  +GI+F        
Sbjct: 52  YFLCFLAVLKLNLKIPVYQLMLVLS-IFDILSLS--VNSVATGIFDIIGISFCQCPHAIF 108

Query: 293 -LSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLS 451
            L  +G A  +  +  SI+    +   I  K ++  +F + V    L T I+ S
Sbjct: 109 FLGAIGQASWMSGSACSILLAVERCVEINPKFILERLFRKRVFCCVLATIIIYS 162


>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform a protein.
          Length = 1020

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
 Frame = -2

Query: 586 TNSNSTE*IHQANSESSAEHHVSRHPVLLLDGHTSKWFRIFLQHTREHDSSDQTVNGDGL 407
           +N   ++   Q  +    E  +S      L  + +    + +QHT    SS  T +GD  
Sbjct: 188 SNDKLSDMTEQIGNNQHLEKLISEKTEKSLSDNETTLKPVPVQHTNSVGSSIGTTSGDSE 247

Query: 406 AEDDGDQIL-----SLDSRCFDTSSHYADTSSV 323
             DD  +       SLD +   TSS + +T+SV
Sbjct: 248 ISDDDQKSWSPKNESLDYQPASTSSEFTETTSV 280


>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform b protein.
          Length = 1061

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
 Frame = -2

Query: 586 TNSNSTE*IHQANSESSAEHHVSRHPVLLLDGHTSKWFRIFLQHTREHDSSDQTVNGDGL 407
           +N   ++   Q  +    E  +S      L  + +    + +QHT    SS  T +GD  
Sbjct: 229 SNDKLSDMTEQIGNNQHLEKLISEKTEKSLSDNETTLKPVPVQHTNSVGSSIGTTSGDSE 288

Query: 406 AEDDGDQIL-----SLDSRCFDTSSHYADTSSV 323
             DD  +       SLD +   TSS + +T+SV
Sbjct: 289 ISDDDQKSWSPKNESLDYQPASTSSEFTETTSV 321


>Z69718-2|CAA93536.1|  139|Caenorhabditis elegans Hypothetical
           protein W06D11.3 protein.
          Length = 139

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -2

Query: 430 QTVNGDGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSE 269
           +TV+ +   + DG++I S ++      +H  DTSS D  G +D+   N K   E
Sbjct: 82  ETVDAEN-EQQDGEKIAS-NTGDAPNITHLVDTSSSDIAGTTDSNNNNDKKTEE 133


>AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin
           reuptake transporter protein.
          Length = 671

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 134 LSYLFVLLVGLAIPIFSLYYVLNGKG 211
           L +   LL  LAIP+F++ Y+L+G G
Sbjct: 602 LGWFLRLLSVLAIPVFAIIYLLSGTG 627


>AF036705-2|AAM98021.1|  237|Caenorhabditis elegans Hypothetical
           protein F37C4.4b protein.
          Length = 237

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/88 (23%), Positives = 44/88 (50%)
 Frame = +2

Query: 293 LSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYS 472
           ++ V A + + T  + +  G V   R +T  ++ ++FC   A+  L+  I     L+ YS
Sbjct: 92  MNTVSAIVSLLTGAMGL--GAVHRYRWRTMLILWLVFCIMSAVGSLLAVITTGIWLDHYS 149

Query: 473 EPFTSVSVKQQNWMAGYVMFGAGLAVGL 556
           +    V     N ++G+++  A +A+G+
Sbjct: 150 K--MKVRTAIGNGLSGFMLL-ASVALGV 174


>AF036705-1|AAB95170.1|  249|Caenorhabditis elegans Hypothetical
           protein F37C4.4a protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/88 (23%), Positives = 44/88 (50%)
 Frame = +2

Query: 293 LSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYS 472
           ++ V A + + T  + +  G V   R +T  ++ ++FC   A+  L+  I     L+ YS
Sbjct: 104 MNTVSAIVSLLTGAMGL--GAVHRYRWRTMLILWLVFCIMSAVGSLLAVITTGIWLDHYS 161

Query: 473 EPFTSVSVKQQNWMAGYVMFGAGLAVGL 556
           +    V     N ++G+++  A +A+G+
Sbjct: 162 K--MKVRTAIGNGLSGFMLL-ASVALGV 186


>AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 5 protein.
          Length = 671

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 134 LSYLFVLLVGLAIPIFSLYYVLNGKG 211
           L +   LL  LAIP+F++ Y+L+G G
Sbjct: 602 LGWFLRLLSVLAIPVFAIIYLLSGTG 627


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 577 CCWYRGLWCCSSGCCQRC 630
           CC  R   CC + CC RC
Sbjct: 95  CCCRRCCTCCRTCCCTRC 112


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 577 CCWYRGLWCCSSGCCQRC 630
           CC  R   CC + CC RC
Sbjct: 93  CCCRRCCTCCRTCCCTRC 110


>Z48716-1|CAA88601.1|  482|Caenorhabditis elegans Hypothetical
           protein F59B10.2 protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/89 (24%), Positives = 34/89 (38%)
 Frame = -2

Query: 685 KKTNGRSKNLNDEDLDEQGSVGSIR*SSTRAHDTNSNSTE*IHQANSESSAEHHVSRHPV 506
           K+   R K        E     S   SST    T+S S+    ++ SES +E  VS    
Sbjct: 197 KEQKARKKKEKTPTPTESSFESSSDSSSTSESSTSSESSSSASESESESKSESQVSSSKT 256

Query: 505 LLLDGHTSKWFRIFLQHTREHDSSDQTVN 419
                 +SK +    +  +   SS  T++
Sbjct: 257 STSKASSSKAYGSDFESEKSSSSSASTIS 285


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 577 CCWYRGLWCCSSGCCQRC 630
           CC  R   CC + CC RC
Sbjct: 94  CCCRRCCTCCRTCCCTRC 111


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 577 CCWYRGLWCCSSGCCQRC 630
           CC  R   CC + CC RC
Sbjct: 94  CCCRRCCTCCRTCCCTRC 111


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 577 CCWYRGLWCCSSGCCQRC 630
           CC  R   CC + CC RC
Sbjct: 95  CCCRRCCTCCRTCCCTRC 112


>AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine
           receptor, class z protein78 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 104 GIWCCFYPLIPKGTAFFRPIFALTRKLKTERSC 6
           G    FY L+   TAF+ PI   TRK  + ++C
Sbjct: 198 GFVALFYVLLFLSTAFYIPIMIRTRKFASIQNC 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,770,839
Number of Sequences: 27780
Number of extensions: 370551
Number of successful extensions: 1454
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -