Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0816
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    29   0.57 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.7  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.7  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    28   1.7  
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz...    28   1.7  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    27   4.0  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    27   4.0  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    27   4.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   7.0  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   7.0  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    26   7.0  

>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 13/144 (9%)
 Frame = +1

Query: 229 IKKMKPGENSMKIISIPEAYKFETFAYEELLKVYTELQNEAKVPADERFKAVKDFGEFDA 408
           I++  PGE +  +  I +    +  A  E LK+Y E  N +   +D+    +      + 
Sbjct: 10  IRESPPGEVNQVVHDIRDIGLSDEEAIHEQLKLYHEDYNSSVSISDDEKVIISADNRLEG 69

Query: 409 QAIILENLAKKGYKTAHRMDVVSLE-YAE---------MAIKQLAKFHALS---FALRER 549
                + L K        M+  ++E Y E           IK++A  H LS   F + ++
Sbjct: 70  NRYYDQVLQKSFTINYETMEAENVEDYTEAIKIPDEIVKQIKKVASDHYLSDVTFGIIKK 129

Query: 550 KPEYYESKIKTIPSRLNLGNEWNG 621
             E     I  + S+ N  N WNG
Sbjct: 130 SDEVESFTIVLVSSKYNPKNYWNG 153


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
 Frame = -2

Query: 399 FPKIFYRFESFIGRYFSFILQFCIYL*QFFIGKCFEFICFWY*YNFHTI----FARLHFL 232
           FP   + F       F  +L F  +L  FF+   F F   ++      +    F  LHFL
Sbjct: 98  FPNFLHPFTGSELSLFRCLLLFFFFL-LFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFL 156

Query: 231 NENVRFFFSFLCCTFYVDFVKRSEIVSTICAYFSFIYTIFS 109
                FFF    C F       S ++S    +   +  +FS
Sbjct: 157 -----FFFFLCVCVFLSFLFSLSHLLSLAILFLPLLLRVFS 192


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +1

Query: 349 AKVPADERFKAVKDFGEFDAQAIILENLAKKGYKTAHRMDVVSLEYAEMAI 501
           AK P +++  A    G+FD   +   N  K  + T HR+  VS+EY E AI
Sbjct: 810 AKQPVEQKNIA----GQFDLPQVHAMNTLKTIF-TEHRLSSVSVEYLEPAI 855


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 667 NLRKKVENILPRLFDNITDYFEGNDSAV 750
           NLR+K   IL RL     D F  N+S V
Sbjct: 462 NLRRKKARILKRLMQESNDTFSANESTV 489


>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/70 (21%), Positives = 33/70 (47%)
 Frame = +1

Query: 502 KQLAKFHALSFALRERKPEYYESKIKTIPSRLNLGNEWNGFVKSMQALTLNFLNDNLRKK 681
           +++ K  ++     E++ +  E  +K +P   N   +WNG V +   L+ +++ +  R  
Sbjct: 247 RRMPKVFSIPLPNAEQRRKILELYLKKVPLEANF--DWNGVVNATAGLSGSYIKEVCRSA 304

Query: 682 VENILPRLFD 711
           +      LFD
Sbjct: 305 LSVPRRELFD 314


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 385 KDFGEFDAQAIILENLAKKGYKTAHRMDVVSLEYAEMAIK 504
           ++F + +   II E      YKT + +  V +++AEM ++
Sbjct: 401 ENFDDLEQSRIIFEKATHVPYKTVNELAQVWIDWAEMELR 440


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 378 FESFIGRYFSFILQFCIYL*QFF 310
           FE F+GRY    +   IYL  FF
Sbjct: 31  FEKFVGRYIYKYISILIYLYSFF 53


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 151 GNYLASLYEIDIKGTTQKGKKETNIFI--KKMKPGENSMKIISI 276
           GNY   L+EID    ++KG + T I++   K+  GE+   I SI
Sbjct: 22  GNY-TKLFEIDTTSMSEKGLELTEIYMARAKLALGESLESIQSI 64


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 502 KQLAKFHALSFALRERKPEYYESKIKTIPSRLNLGNEWNGF-VKSMQALTLNFLND 666
           +QL+KF ++   LRE KP    SK+K +   +    + +GF +     +T++FL D
Sbjct: 266 RQLSKFASVQDRLREWKPS-VASKLKRLSCLVISMLDVDGFRIDKATQMTVDFLVD 320


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 213 FFSFLCCTFYVDFVKRSEIVSTICAYFSFIYTI--FSIAFLNYNISNVS 73
           FF+ +    Y   +  S++ S + A+F FI ++    I+F+++    VS
Sbjct: 514 FFTTIFLNTYASMISSSDLFSILGAHFRFICSLNFGKISFISHEFYRVS 562


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 193 TTQKGKKETNIFIKKMKPGENSMKI 267
           TT   KKE+N+F+ ++ PG ++ +I
Sbjct: 65  TTNDLKKESNVFLVRLPPGMSADQI 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,765
Number of Sequences: 5004
Number of extensions: 65026
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)