Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0816
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16540.1 68416.m02112 DegP protease, putative contains simila...    32   0.37 
At4g21230.1 68417.m03070 protein kinase family protein contains ...    32   0.49 
At5g13520.1 68418.m01561 peptidase M1 family protein similar to ...    29   3.5  
At5g62750.1 68418.m07877 expressed protein predicted proteins, C...    28   6.0  
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea...    28   6.0  

>At3g16540.1 68416.m02112 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 555

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 199 QKGKK-ETNIFIKKMKPGENSMKIISIPEAYKFETFAYEELLKVYTELQNEAKVPAD 366
           + GK+ E NI +K +KP     +  ++P  Y F  F +  L K Y + ++  ++  D
Sbjct: 392 RNGKEYEYNISLKPVKPNFTVQQFYNVPSYYIFGGFVFVPLTKTYLDSEHHQRLADD 448


>At4g21230.1 68417.m03070 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 642

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 213 FFSFLCCTFYVDFVKRSEIVSTICAYFSFIYTIFSIAFLNYN 88
           FFSF   TF+V + +++  V TIC Y    +T  +   LN N
Sbjct: 11  FFSFFFLTFFVTYAQQNVTVHTICYYDGGNFTSNTSYSLNLN 52


>At5g13520.1 68418.m01561 peptidase M1 family protein similar to
           SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4
           hydrolase) {Homo sapiens}; contains Pfam profile
           PF01433: Peptidase family M1
          Length = 616

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
 Frame = +1

Query: 214 ETNIFIKKMK---PG-ENSMKIISIPEAYKFETFAYEELLKVYTELQNEAKVPADERFKA 381
           +TN F++ +K   PG E  + +    E       AYE +  +YT++ + AK   + +  +
Sbjct: 433 DTNTFLEFLKANIPGIEKEINLQLWTEGVGIPEDAYEPVSTIYTKIISLAKEFKEGKMPS 492

Query: 382 VKDFGEFDAQ--AIILENLAK 438
             D  E++ Q   + LENL K
Sbjct: 493 EDDVAEWNGQEWELYLENLPK 513


>At5g62750.1 68418.m07877 expressed protein predicted proteins,
           Caenorhabditis elegans
          Length = 124

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/68 (32%), Positives = 30/68 (44%)
 Frame = +1

Query: 124 DKREICTNGGNYLASLYEIDIKGTTQKGKKETNIFIKKMKPGENSMKIISIPEAYKFETF 303
           DK E   NGG       E   K   +K KKE N   KK  P +  MK+  I E  +    
Sbjct: 37  DKNEDDKNGGGEEGEDQEKKSKKKDKKAKKEKNPEDKK-DPEKLKMKLQKIEEKIQAMVL 95

Query: 304 AYEELLKV 327
             +E++K+
Sbjct: 96  KKDEIVKL 103


>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400); AND-1
           protein - Homo sapiens, EMBL:AJ006266
          Length = 951

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +1

Query: 106 YTKYSVDKREICTNGGNYLASLYEIDIKGTTQKGKKETNIFIKKMKPGENSMKIISIPEA 285
           Y  ++ + + I T+G +    L+++D K    + K E  I     KP  N++ +I     
Sbjct: 243 YLTWAPNGKYIATSGLDKQVLLWDVDKKQDIDRHKFEERICCMSWKPNGNALSVIDAKGR 302

Query: 286 Y 288
           Y
Sbjct: 303 Y 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,358,364
Number of Sequences: 28952
Number of extensions: 305059
Number of successful extensions: 860
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)